Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B05
         (562 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal...    85   2e-16
AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens ...    85   2e-16
BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal...    83   9e-16
AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.              83   9e-16
AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal...    55   2e-07
BC030275-1|AAH30275.1|  965|Homo sapiens vacuolar protein sortin...    29   8.5  
AY444798-1|AAS20945.1|  977|Homo sapiens vacuolar sorting protei...    29   8.5  

>BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 60/96 (62%)
 Frame = +2

Query: 248 DPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 427
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 428 KITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEP 535
           +I P++ P G PT  +++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPTEENMSNTCLKSTGELVVQWHLKP 153


>AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44438 fis, clone UTERU2019940, moderately
           similar to Homo sapiens mitochondrial ribosomal protein
           L30 (MRPL30). ).
          Length = 191

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 60/96 (62%)
 Frame = +2

Query: 248 DPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 427
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 89  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 147

Query: 428 KITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEP 535
           +I P++ P G PT  +++ T LK  G+ +V   L+P
Sbjct: 148 RIKPLKLPQGLPTEENMSNTCLKSTGELVVQWHLKP 183


>BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 82.6 bits (195), Expect = 9e-16
 Identities = 41/96 (42%), Positives = 59/96 (61%)
 Frame = +2

Query: 248 DPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 427
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 428 KITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEP 535
           +I P++ P G P   +++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 153


>AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.
          Length = 161

 Score = 82.6 bits (195), Expect = 9e-16
 Identities = 41/96 (42%), Positives = 59/96 (61%)
 Frame = +2

Query: 248 DPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 427
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 428 KITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEP 535
           +I P++ P G P   +++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 153


>AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 68

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 371 VVKNIPEINAKLWKIKHLIKITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEP 535
           V KNIP +NAKL  +KHLI+I P++ P G P   +++ T LK  G+ +V   L+P
Sbjct: 6   VHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 60


>BC030275-1|AAH30275.1|  965|Homo sapiens vacuolar protein sorting
           54 homolog (S. cerevisiae) protein.
          Length = 965

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 239 DYKDPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETR 364
           D+ D E+ PS  F + +I S +HF  +Q+ I    KIHE  +
Sbjct: 85  DFVDTEVIPS--FYLPQI-SKEHFTVYQQEISQREKIHERCK 123


>AY444798-1|AAS20945.1|  977|Homo sapiens vacuolar sorting protein
           54 long isoform protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 239 DYKDPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETR 364
           D+ D E+ PS  F + +I S +HF  +Q+ I    KIHE  +
Sbjct: 97  DFVDTEVIPS--FYLPQI-SKEHFTVYQQEISQREKIHERCK 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,193,863
Number of Sequences: 237096
Number of extensions: 1673473
Number of successful extensions: 3021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3010
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)