BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B05 (562 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g06820.1 68415.m00761 expressed protein low similarity to zin... 31 0.70 At1g20530.1 68414.m02558 hypothetical protein 31 0.70 At5g47880.1 68418.m05915 eukaryotic peptide chain release factor... 28 4.9 At3g61570.1 68416.m06896 intracellular protein transport protein... 27 6.5 At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof... 27 6.5 At1g03080.1 68414.m00282 kinase interacting family protein simil... 27 8.6 >At2g06820.1 68415.m00761 expressed protein low similarity to zinc finger protein [Arabidopsis thaliana] GI:976277 Length = 267 Score = 30.7 bits (66), Expect = 0.70 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Frame = +2 Query: 275 FXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAK----LWKIKHLIKITPI 442 F +E KHF W+ ++L ++ EE + K I + K L ++ LIK T + Sbjct: 119 FWIELQGLPKHF--WKPKMLQAIR--EELGEVMTKEITSSSVKIKVLLDGLQPLIKETIV 174 Query: 443 EFPYGEPTAXDINYTILKENGQCLVTKKLEPE 538 +FP G ++Y LK + CL ++L E Sbjct: 175 DFPNGGEAVVYLDYKNLKNH--CLHCQRLSHE 204 >At1g20530.1 68414.m02558 hypothetical protein Length = 614 Score = 30.7 bits (66), Expect = 0.70 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = +2 Query: 317 WQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTAXDINYTILK 496 W+K++ E+K E+ R + +KN + K L KI I + + + +I K Sbjct: 318 WEKKLYQEVKAEEKLRTSHMKNYKLLRRLEAKSADLSKIEAIRSSI-QCLSTRMRVSIHK 376 Query: 497 ENGQCLVTKKLEPE 538 N CL KL E Sbjct: 377 INNICLTINKLRDE 390 >At5g47880.1 68418.m05915 eukaryotic peptide chain release factor subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic peptide chain release factor subunit 1-1 (eRF1-1) (Eukaryotic release factor 1-1) (Omnipotent suppressor protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis thaliana}, eukaryotic release factor 1 homolog GI:1155261 from [Arabidopsis thaliana]; contains Pfam profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1 domain 3 Length = 436 Score = 27.9 bits (59), Expect = 4.9 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +2 Query: 377 KNIPEINAKLWKIKHLIKITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEPEFG 544 KN + N ++WKIK LIK +E G T+ I+ + + VTK L E+G Sbjct: 4 KNDDDKNIEIWKIKKLIK--SLEAARGNGTSM-ISLIMPPRDQVSRVTKMLGDEYG 56 >At3g61570.1 68416.m06896 intracellular protein transport protein USO1-related contains weak similarity to intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae] Length = 712 Score = 27.5 bits (58), Expect = 6.5 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Frame = +2 Query: 323 KRILDELKIHE-ETRVTVVKNIPEINAKLWKIKHL-IKITPIE---FPYGEPTAXDINYT 487 K L+ +++ + +T + + K E++AKL +IKHL +K+T E G ++N Sbjct: 226 KEELESMRLDKNKTSMEISKMRSELDAKLLEIKHLQMKLTGQESHAIGPGMEHLKEVNKA 285 Query: 488 ILKENGQCLVTKKLEPE 538 + KEN + L K+ E E Sbjct: 286 LEKENNE-LKLKRSELE 301 >At2g34230.1 68415.m04188 hypothetical protein contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 716 Score = 27.5 bits (58), Expect = 6.5 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +2 Query: 239 DYKDPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEI 394 D+K +I + +RIKS K F Y D +E R T++K E+ Sbjct: 298 DWKPVDIAQAANLINDRIKSQKEFVYVNGWCSDWPVAGDEKRETILKQFSEV 349 >At1g03080.1 68414.m00282 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 1744 Score = 27.1 bits (57), Expect = 8.6 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 284 ERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHL 424 ER H +KRI D K H E +V V++ E + L KI+ L Sbjct: 777 ERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATERESSLQKIEEL 823 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,196,697 Number of Sequences: 28952 Number of extensions: 245942 Number of successful extensions: 524 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 524 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1072696904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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