Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B05
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06820.1 68415.m00761 expressed protein low similarity to zin...    31   0.70 
At1g20530.1 68414.m02558 hypothetical protein                          31   0.70 
At5g47880.1 68418.m05915 eukaryotic peptide chain release factor...    28   4.9  
At3g61570.1 68416.m06896 intracellular protein transport protein...    27   6.5  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   6.5  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   8.6  

>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +2

Query: 275 FXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAK----LWKIKHLIKITPI 442
           F +E     KHF  W+ ++L  ++  EE    + K I   + K    L  ++ LIK T +
Sbjct: 119 FWIELQGLPKHF--WKPKMLQAIR--EELGEVMTKEITSSSVKIKVLLDGLQPLIKETIV 174

Query: 443 EFPYGEPTAXDINYTILKENGQCLVTKKLEPE 538
           +FP G      ++Y  LK +  CL  ++L  E
Sbjct: 175 DFPNGGEAVVYLDYKNLKNH--CLHCQRLSHE 204


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 317 WQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTAXDINYTILK 496
           W+K++  E+K  E+ R + +KN   +     K   L KI  I     +  +  +  +I K
Sbjct: 318 WEKKLYQEVKAEEKLRTSHMKNYKLLRRLEAKSADLSKIEAIRSSI-QCLSTRMRVSIHK 376

Query: 497 ENGQCLVTKKLEPE 538
            N  CL   KL  E
Sbjct: 377 INNICLTINKLRDE 390


>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
           subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
           peptide chain release factor subunit 1-1 (eRF1-1)
           (Eukaryotic release factor 1-1) (Omnipotent suppressor
           protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
           thaliana}, eukaryotic release factor 1 homolog
           GI:1155261 from [Arabidopsis thaliana]; contains Pfam
           profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
           PF03465 eRF1 domain 3
          Length = 436

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +2

Query: 377 KNIPEINAKLWKIKHLIKITPIEFPYGEPTAXDINYTILKENGQCLVTKKLEPEFG 544
           KN  + N ++WKIK LIK   +E   G  T+  I+  +   +    VTK L  E+G
Sbjct: 4   KNDDDKNIEIWKIKKLIK--SLEAARGNGTSM-ISLIMPPRDQVSRVTKMLGDEYG 56


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = +2

Query: 323 KRILDELKIHE-ETRVTVVKNIPEINAKLWKIKHL-IKITPIE---FPYGEPTAXDINYT 487
           K  L+ +++ + +T + + K   E++AKL +IKHL +K+T  E      G     ++N  
Sbjct: 226 KEELESMRLDKNKTSMEISKMRSELDAKLLEIKHLQMKLTGQESHAIGPGMEHLKEVNKA 285

Query: 488 ILKENGQCLVTKKLEPE 538
           + KEN + L  K+ E E
Sbjct: 286 LEKENNE-LKLKRSELE 301


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 239 DYKDPEITPSKLFXVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEI 394
           D+K  +I  +     +RIKS K F Y      D     +E R T++K   E+
Sbjct: 298 DWKPVDIAQAANLINDRIKSQKEFVYVNGWCSDWPVAGDEKRETILKQFSEV 349


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 284 ERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHL 424
           ER     H    +KRI D  K H E +V V++   E  + L KI+ L
Sbjct: 777 ERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATERESSLQKIEEL 823


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,697
Number of Sequences: 28952
Number of extensions: 245942
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)