BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_B02 (624 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 27 2.9 SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 5.1 SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7 SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 8.9 SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 8.9 >SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosaccharomyces pombe|chr 2|||Manual Length = 198 Score = 26.6 bits (56), Expect = 2.9 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -1 Query: 351 LXYVHELNF*DQNYLRNASFKKYMLQTQNNIKKIFXSARYYP 226 L + H L F D N K+ ++ T+N+++ + S +Y P Sbjct: 140 LNFYHSLGF-DLETAENTGNKRVIIHTENDLQTVQISNKYSP 180 >SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 25.8 bits (54), Expect = 5.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -1 Query: 321 DQNYLRNASFKKYMLQTQNNIKKIFXSAR 235 DQNYL N S K + N +K F SAR Sbjct: 46 DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74 >SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 25.4 bits (53), Expect = 6.7 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Frame = +1 Query: 319 ILKIQLVNVXKQTGKNISLLEK*XEFMMTTVILLKLAK---TCVIASMRSVPDAI----- 474 ++ + LVN+ K LL++ EF+ T+++L LA + V A Sbjct: 76 LIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVGGFAYIDVDRNLVQGAAMKIFS 135 Query: 475 FHVQTAIPINVAM 513 F QTA+PI++A+ Sbjct: 136 FTFQTALPISIAI 148 >SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosaccharomyces pombe|chr 3|||Manual Length = 436 Score = 25.0 bits (52), Expect = 8.9 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 19 IFVYXVTAGYFSFSATSHRRVGELTSLAKP 108 I ++ + G F+A +H+R+ E + AKP Sbjct: 277 ILIFDLLTGSPPFTANNHKRIMEKITRAKP 306 >SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces pombe|chr 1|||Manual Length = 591 Score = 25.0 bits (52), Expect = 8.9 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 366 YFTSRKVXRIYDDHGHIAETGKD 434 YF + V YD GHIAE KD Sbjct: 311 YFATAGVIVGYDASGHIAEETKD 333 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,103,199 Number of Sequences: 5004 Number of extensions: 36046 Number of successful extensions: 90 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 90 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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