Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B02
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    27   2.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   5.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   8.9  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   8.9  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 351 LXYVHELNF*DQNYLRNASFKKYMLQTQNNIKKIFXSARYYP 226
           L + H L F D     N   K+ ++ T+N+++ +  S +Y P
Sbjct: 140 LNFYHSLGF-DLETAENTGNKRVIIHTENDLQTVQISNKYSP 180


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 321 DQNYLRNASFKKYMLQTQNNIKKIFXSAR 235
           DQNYL N S K      + N +K F SAR
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +1

Query: 319 ILKIQLVNVXKQTGKNISLLEK*XEFMMTTVILLKLAK---TCVIASMRSVPDAI----- 474
           ++ + LVN+ K       LL++  EF+  T+++L LA      +      V  A      
Sbjct: 76  LIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVGGFAYIDVDRNLVQGAAMKIFS 135

Query: 475 FHVQTAIPINVAM 513
           F  QTA+PI++A+
Sbjct: 136 FTFQTALPISIAI 148


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 19  IFVYXVTAGYFSFSATSHRRVGELTSLAKP 108
           I ++ +  G   F+A +H+R+ E  + AKP
Sbjct: 277 ILIFDLLTGSPPFTANNHKRIMEKITRAKP 306


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 366 YFTSRKVXRIYDDHGHIAETGKD 434
           YF +  V   YD  GHIAE  KD
Sbjct: 311 YFATAGVIVGYDASGHIAEETKD 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,199
Number of Sequences: 5004
Number of extensions: 36046
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)