Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B02
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             77   1e-14
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   29   3.1  
SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)                    28   5.4  

>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 32/68 (47%), Positives = 40/68 (58%)
 Frame = +3

Query: 357 RKKYFTSRKVXRIYDDHGHIAETGKDLCDCLDEKCPGCHFPCANCNSNKCGHECXINXKW 536
           R+K     K  R +D  G     GKD+CDC D  CPGCHFPC+ C S KCG EC  + KW
Sbjct: 113 RRKRTPPSKQAR-HDRSGVRLSDGKDVCDCQDLNCPGCHFPCSACGSEKCGVECRCSRKW 171

Query: 537 MYDKIEIQ 560
            Y  +E++
Sbjct: 172 TYIDVEVE 179


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +3

Query: 444 CLDEKCPGCHFPCA---NCNSNKCGHEC 518
           C D KCP C   C    NC ++KC  +C
Sbjct: 293 CCDGKCPPCEQTCGRTLNCKNHKCPSQC 320


>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 453 EKCPGCHFPCANCNSN-KCGHECXINXKWM 539
           +KCPG ++    CN+N  C  E   + KW+
Sbjct: 248 DKCPGWNYNDRRCNTNVACPSESSYHIKWL 277


>SB_10726| Best HMM Match : DUF636 (HMM E-Value=3.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 438 CDCLDEKCPGCHFPCANCN 494
           C+C ++K    H PCA CN
Sbjct: 10  CNCTEKKYRHVHCPCATCN 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,543
Number of Sequences: 59808
Number of extensions: 263113
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)