Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B02
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 480 CANCNSNKCGH 512
           C NC  N C H
Sbjct: 427 CTNCGPNPCTH 437


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 480 CANCNSNKCGH 512
           C NC  N C H
Sbjct: 413 CTNCGPNPCTH 423


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 480 CANCNSNKCGH 512
           C NC  N C H
Sbjct: 447 CTNCGPNPCTH 457


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 480 CANCNSNKCGH 512
           C NC  N C H
Sbjct: 396 CTNCGPNPCTH 406


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 374 SEIFFPVCFXTF 339
           S I FPVCF  F
Sbjct: 408 SRIVFPVCFVCF 419


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 374 SEIFFPVCFXTF 339
           S I FPVCF  F
Sbjct: 408 SRIVFPVCFVCF 419


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 374 SEIFFPVCFXTF 339
           S I FPVCF  F
Sbjct: 346 SRIVFPVCFVCF 357


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/12 (41%), Positives = 12/12 (100%)
 Frame = -2

Query: 596 VFVIIFYNKIIS 561
           +F+I+FY++++S
Sbjct: 234 IFIILFYSRLLS 245


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 476 KMASGTLLIEAITQVFASFS 417
           K++   + I+A+TQ+F S++
Sbjct: 273 KLSDPEVWIDAVTQIFFSYA 292


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 476 KMASGTLLIEAITQVFASFS 417
           K++   + I+A+TQ+F S++
Sbjct: 326 KLSDPEVWIDAVTQIFFSYA 345


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/12 (41%), Positives = 12/12 (100%)
 Frame = -2

Query: 596 VFVIIFYNKIIS 561
           +F+I+FY++++S
Sbjct: 234 IFIILFYSRLLS 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,645
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)