Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_B02
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    31   0.62 
At3g05640.2 68416.m00628 protein phosphatase 2C, putative / PP2C...    30   1.4  
At3g05640.1 68416.m00627 protein phosphatase 2C, putative / PP2C...    30   1.4  
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat...    29   3.3  
At3g21880.1 68416.m02759 zinc finger (B-box type) family protein...    27   7.7  

>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = -2

Query: 623 IIILYFQLXVFVIIFYN--KII--SLYFNFVIHPFXVNXALMATFIGIAVCTWKMASGTL 456
           ++++  Q+ V   IF N  KI+  S+ + FVIHPF V         G+ +   +M     
Sbjct: 640 LVVMSSQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGD--RCEIDGVQMVVEEM----- 692

Query: 455 LIEAITQVFASFSNMTVVIINSXHFSRS 372
               +T VF  F N  VV  NS  +++S
Sbjct: 693 --NILTTVFLRFDNQKVVYPNSLLWTKS 718


>At3g05640.2 68416.m00628 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 358

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 481 HGKWHPGHFSSRQSHKSLPVSAI*PW 404
           HG W  GHF S+Q   S+P+S +  W
Sbjct: 100 HGPW--GHFVSKQVRNSMPISLLCNW 123


>At3g05640.1 68416.m00627 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase-2C GB:AAC36699
           from [Mesembryanthemum crystallinum]
          Length = 358

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 481 HGKWHPGHFSSRQSHKSLPVSAI*PW 404
           HG W  GHF S+Q   S+P+S +  W
Sbjct: 100 HGPW--GHFVSKQVRNSMPISLLCNW 123


>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 313

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 402 DHGHIAETGKDLCDCLDEKCPGCHFPCANCNS 497
           D+GHIA +    C  L  KCP C  P  N  S
Sbjct: 59  DNGHIACSS--CCTKLRNKCPSCALPIGNFRS 88


>At3g21880.1 68416.m02759 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GB:BAA33206
           from [Oryza sativa]
          Length = 364

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 444 CLDEK---CPGCHFPCANCNSNKCGH 512
           CLDEK   C GCH+  +NC  ++ GH
Sbjct: 60  CLDEKVSYCQGCHWHESNC--SELGH 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,658
Number of Sequences: 28952
Number of extensions: 177212
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)