Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A24
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   148   4e-36
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    30   1.5  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    30   1.5  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  148 bits (358), Expect = 4e-36
 Identities = 70/121 (57%), Positives = 88/121 (72%)
 Frame = +1

Query: 145 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVXGAKDRNDAVFYAGKHCVYVYR 324
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+ G  ++ DA FYAGK  VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 325 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSR 504
           A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RIRV+LYPS 
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSN 123

Query: 505 I 507
           I
Sbjct: 124 I 124


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 447 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 292
           ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 447  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 292
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = +2

Query: 158 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRXKEQKTVMMQSFMLASIASMCTELRRG 337
           H SP+T+  T    S   S   +TST TP +   +   T    S   +S  +  T  +  
Sbjct: 94  HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150

Query: 338 HQFPEVPVAKKPSCVLSGAR*P 403
              PE+P A  P  VL G   P
Sbjct: 151 Q--PEIPQA-APGTVLKGEEFP 169


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 506 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 411
           +L+G S+ RI    AW   +D+ +  T P  P
Sbjct: 38  VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 315 IDAMLASIKDCIITVFCSXNLEESGVLVL 229
           IDAM+    D +++V  S  LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,094
Number of Sequences: 27780
Number of extensions: 251986
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)