Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A24
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...   111   4e-25
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...   111   4e-25
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...   109   1e-24
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...   109   1e-24
At5g53660.1 68418.m06665 expressed protein                             31   0.61 
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   7.5  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    27   7.5  
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    27   7.5  
At5g51195.1 68418.m06348 hypothetical protein                          27   9.9  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/110 (47%), Positives = 69/110 (62%)
 Frame = +1

Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVXGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 357
           RLY +    GYKR   NQ+ NT+L+++ G   + +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 507
               +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score =  111 bits (267), Expect = 4e-25
 Identities = 53/110 (48%), Positives = 68/110 (61%)
 Frame = +1

Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVXGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 357
           RLY +    GYKR   NQ+ NT+L++V G     +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 507
               +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV +YPS I
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score =  109 bits (263), Expect = 1e-24
 Identities = 51/110 (46%), Positives = 69/110 (62%)
 Frame = +1

Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVXGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 357
           RLY +    GYKR   NQ+ NT+L+++ G   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 507
               +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score =  109 bits (262), Expect = 1e-24
 Identities = 51/110 (46%), Positives = 69/110 (62%)
 Frame = +1

Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVXGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 357
           RLY +    GYKR   NQ+ NT+L+++ G   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 507
               +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV +YPS I
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At5g53660.1 68418.m06665 expressed protein
          Length = 365

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR-VMLYPSRI*EPSANYKN 534
           RG+    + +    +RP+ N GSV+ +    LP +     I+   L P  +    +NY++
Sbjct: 140 RGRPRSRKHVEPPYSRPNNNGGSVKNRDLKKLPQKLSSSSIKDKTLEPMEVSSSISNYRD 199

Query: 535 KNKIQKKTNSVSLTSQFNK 591
               +K T  ++ T Q NK
Sbjct: 200 SRGSEKFT-VLATTEQENK 217


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 489 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 322
           H S  +S  +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +1

Query: 262 GAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKF 441
           G K+R   VF+   H   +++ +    +    +G   +   +W K+   +G++  + A F
Sbjct: 509 GLKERELCVFFRNNHFCTMFKYEGELYLLATDQGYLNQPDLVWEKLNEVNGDTAFMTATF 568

Query: 442 K 444
           K
Sbjct: 569 K 569


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 432 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 337
           SDT  ++   G L   S ++ FF + TSG +C
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 453 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 337
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,972
Number of Sequences: 28952
Number of extensions: 240448
Number of successful extensions: 626
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)