Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A17
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       109   2e-24
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       109   2e-24
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       106   1e-23
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  109 bits (262), Expect = 2e-24
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
 Frame = +2

Query: 20  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFXXXXXXXXXXXX 199
           L+LQ+ A P++E+                             K   R+            
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 200 XXPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 373
             PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 374 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNF 553
           + ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 554 FINRXG 571
           FI R G
Sbjct: 195 FIKRPG 200


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  109 bits (262), Expect = 2e-24
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
 Frame = +2

Query: 20  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFXXXXXXXXXXXX 199
           L+LQ+ A P++E+                             K   R+            
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 200 XXPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 373
             PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 374 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNF 553
           + ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 554 FINRXG 571
           FI R G
Sbjct: 195 FIKRPG 200


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  106 bits (255), Expect = 1e-23
 Identities = 60/184 (32%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
 Frame = +2

Query: 20  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFXXXXXXXXXXXX 199
           L+LQ+ A P++E+                             K   R+            
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 200 XXPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 373
             PA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 374 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNF 553
           + ++   +FRLL+VD               TA DVIHS  +P+L +K+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 554 FINR 565
           FI +
Sbjct: 195 FIKK 198


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 425 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 315
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,367
Number of Sequences: 59808
Number of extensions: 138352
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)