Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A16
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    29   0.77 
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   5.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.5  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 556 ILFHFLKLRFLQTLRTFLEDLIETSDLHLFS*FETYLLLFHVQVTCIVKV 407
           +L H+ K  FLQTL T L+    T D       ET L L+ V V C  K+
Sbjct: 303 LLKHYAK--FLQTLETILKSFSSTLD-------ETQLSLYQVAVRCCTKL 343


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 298 ESGRVRS*WVIFVALNNFQDSSRKLFHSCSSXI-----SFVSPKTCLSNFRKSKV*QNTQ 134
           ES ++ S + + V L++     +  F S  S +     +FV PKT  SN   + + +N Q
Sbjct: 335 ESTKLYSLFTLLVKLSDIPLDEKYDFSSRFSTLLLQFQAFVQPKTMTSNVSTAPIGKNAQ 394

Query: 133 IN 128
           +N
Sbjct: 395 VN 396


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 360 YG*CPWTTMSIPRRMYTLTIQVTCTWNSNRY 452
           Y  C   +  +PRR+Y L + +TC      Y
Sbjct: 378 YNMCESPSEKLPRRLYLLLVCITCLTKHQYY 408


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 529 FLQTLRTFLEDLIETSDLHLF 467
           FLQT ++F E  IET+DL+ F
Sbjct: 107 FLQTTKSFHEAGIETADLNDF 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,614
Number of Sequences: 5004
Number of extensions: 46279
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)