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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A14
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    82   4e-16
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    78   4e-15
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    77   8e-15
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    77   1e-14
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    77   1e-14
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    77   1e-14
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    74   7e-14
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    74   7e-14
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    74   7e-14
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    73   2e-13
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    73   2e-13
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    70   1e-12
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    70   2e-12
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    55   4e-08
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    54   6e-08
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    54   6e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS...    53   1e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    52   3e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    49   3e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    49   3e-06
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    48   4e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    48   5e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    46   2e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    46   2e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    46   2e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    46   2e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    46   2e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s...    45   5e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    45   5e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    45   5e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    45   5e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    44   7e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    44   7e-05
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p...    44   7e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    44   9e-05
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    44   9e-05
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein...    44   1e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    44   1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    43   2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    43   2e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    43   2e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    43   2e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    43   2e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    43   2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    43   2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    42   3e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    42   3e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    42   3e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ...    42   4e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    42   5e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    42   5e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    41   6e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    41   8e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    40   0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    40   0.001
At2g47310.1 68415.m05906 flowering time control protein-related ...    40   0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    39   0.003
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    39   0.003
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    39   0.003
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    39   0.003
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    39   0.003
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    39   0.003
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    39   0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    39   0.003
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    39   0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              38   0.004
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    38   0.004
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    38   0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    38   0.004
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       38   0.004
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    38   0.006
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    38   0.008
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    37   0.010
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    37   0.010
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s...    37   0.010
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    37   0.010
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    37   0.010
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    37   0.013
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    37   0.013
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    37   0.013
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)...    36   0.018
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    36   0.018
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    36   0.018
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    36   0.018
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    36   0.018
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    36   0.018
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    36   0.018
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t...    36   0.023
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    36   0.031
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    36   0.031
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    36   0.031
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    36   0.031
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu...    36   0.031
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu...    36   0.031
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS...    35   0.041
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    35   0.041
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    35   0.041
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    35   0.054
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    35   0.054
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    35   0.054
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    35   0.054
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    35   0.054
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    35   0.054
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...    35   0.054
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu...    35   0.054
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to...    35   0.054
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative...    34   0.071
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil...    34   0.071
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil...    34   0.071
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    34   0.071
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    34   0.071
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    34   0.071
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr...    34   0.094
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      34   0.094
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    33   0.12 
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    33   0.12 
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    33   0.12 
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    33   0.12 
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    33   0.16 
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    33   0.16 
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    33   0.16 
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    33   0.16 
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    33   0.16 
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    33   0.16 
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    33   0.22 
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    33   0.22 
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    33   0.22 
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    33   0.22 
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    33   0.22 
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    33   0.22 
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    32   0.29 
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    32   0.29 
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    32   0.29 
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    32   0.29 
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    32   0.29 
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    32   0.29 
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    32   0.29 
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    32   0.38 
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    32   0.38 
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    31   0.50 
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ...    31   0.50 
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    31   0.66 
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    31   0.66 
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    31   0.88 
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ...    30   1.2  
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ...    30   1.2  
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    30   1.5  
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    30   1.5  
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    30   1.5  
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ...    29   2.0  
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...    29   2.0  
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...    29   2.0  
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...    29   2.0  
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ...    29   2.0  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    29   2.0  
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ...    29   2.0  
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    29   2.7  
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    29   3.5  
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    29   3.5  
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ...    29   3.5  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    29   3.5  
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    28   4.7  
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    28   4.7  
At5g24440.1 68418.m02880 RNA-binding protein, putative                 28   6.2  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    28   6.2  
At1g60095.1 68414.m06771 jacalin lectin family protein contains ...    28   6.2  
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    27   8.2  
At4g13330.1 68417.m02083 expressed protein                             27   8.2  

>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 36/73 (49%), Positives = 50/73 (68%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 335
           +VYVGNL    ++ E+E  F  +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG  
Sbjct: 3   RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62

Query: 336 CCGTRIRVEMSNG 374
             G R+    + G
Sbjct: 63  --GWRVEQSHNRG 73


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           +YVGNL  +  K E+E +F KYG I ++   +   PPG+AFVEFEDPRDA+D++ G DG 
Sbjct: 9   IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G R+RVE+++G
Sbjct: 69  DFDGCRLRVEIAHG 82


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 35/73 (47%), Positives = 49/73 (67%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 335
           +VYVGNL    ++ E+E  F  +G IR+VWVAR PPG+AF++FED RDA D++R +DG  
Sbjct: 3   RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN 62

Query: 336 CCGTRIRVEMSNG 374
             G R+    + G
Sbjct: 63  --GWRVEQSHNRG 73


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           VYVGNL  +  + E+E +FSKYG +  +   V   PPG+AFVEF+D RDAED++ G DG 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G R+RVE+++G
Sbjct: 69  DFDGHRLRVELAHG 82


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           VYVGNL  +  + E+E +FSKYG +  +   V   PPG+AFVEF+D RDAED++ G DG 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G R+RVE+++G
Sbjct: 69  DFDGHRLRVELAHG 82


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           VYVGNL  +  + E+E +FSKYG +  +   V   PPG+AFVEF+D RDAED++ G DG 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G R+RVE+++G
Sbjct: 69  DFDGHRLRVELAHG 82


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 323
           S  +YVGNL  +  ++EIE IF KYG I ++   V   PP + FVEFE  RDAED+++G 
Sbjct: 6   SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65

Query: 324 DGTRCCGTRIRVEMSNG 374
           DG    G R+RVE+++G
Sbjct: 66  DGYNLDGCRLRVELAHG 82


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 31/57 (54%), Positives = 42/57 (73%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326
           +VYVGNL    ++ E+E  F  +G +RNVWVAR PPG+AF+EF+D RDA D++  LD
Sbjct: 3   RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 31/57 (54%), Positives = 42/57 (73%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326
           +VYVGNL    ++ E+E  F  +G +RNVWVAR PPG+AF+EF+D RDA D++  LD
Sbjct: 3   RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           +YVGNL  +  + E+E +FSKYG +  +   +   PPG+AFVEFED RDA+D++ G DG 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G  +RVE+++G
Sbjct: 69  DFDGHHLRVELAHG 82


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           +YVGNL  +  + E+E +FSKYG +  +   +   PPG+AFVEFED RDA+D++ G DG 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 333 RCCGTRIRVEMSNG 374
              G  +RVE+++G
Sbjct: 69  DFDGHHLRVELAHG 82


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 36/84 (42%), Positives = 54/84 (64%)
 Frame = +3

Query: 123 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 302
           M RY +   + ++YVG L +     ++E++FS+YG +R+V + R+   +AFVEF DPRDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57

Query: 303 EDSVRGLDGTRCCGTRIRVEMSNG 374
           +D+   LDG    G+RI VE S G
Sbjct: 58  DDARHYLDGRDFDGSRITVEFSRG 81


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/84 (42%), Positives = 54/84 (64%)
 Frame = +3

Query: 123 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 302
           M RY +   + ++YVG L +     ++E++FS+YG +R+V + R+   +AFVEF DPRDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57

Query: 303 EDSVRGLDGTRCCGTRIRVEMSNG 374
           +D+   LDG    G+RI VE S G
Sbjct: 58  DDARYYLDGRDFDGSRITVEASRG 81


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           VYVGN   +    ++E++FSK+G ++ V +     G+AFV FED RDAED++R  D T
Sbjct: 4   VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           V+ GN   +A + ++E++F KYG +  V +     GFAFV  ED RDAED++R LD    
Sbjct: 4   VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60

Query: 339 --CGTRIRVE 362
              G R+RVE
Sbjct: 61  GRTGRRLRVE 70


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           V+ GN   +A + ++E++F KYG +  V +     GFAFV  ED RDAED++R LD    
Sbjct: 4   VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60

Query: 339 --CGTRIRVE 362
              G R+RVE
Sbjct: 61  GRTGRRLRVE 70


>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 350

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           V+ GN   +A + ++E++F KYG +  V +     GFAFV  ED RDAED++R LD    
Sbjct: 4   VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60

Query: 339 --CGTRIRVE 362
              G R+RVE
Sbjct: 61  GRKGRRLRVE 70



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 183 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362
           N    ++EK F  YG I NV + RN   FAF+++E   DA  ++   + ++     I VE
Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 164


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326
           V+VGN      + ++E++F KYG +  V +     G+AFV FED RDAED++R LD
Sbjct: 4   VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 192 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362
           +++IEK F  YG + NV + RN   F+FV+FE   DA  ++     ++     + VE
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 311
           ++ +VYVGNL    +   + + FS YGN+ +  V R+       GF FV +    +AE +
Sbjct: 1   MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60

Query: 312 VRGLDGTRCCGTRIRVEM 365
           V G+DG    G R+ V++
Sbjct: 61  VSGMDGKELNGRRVSVKL 78


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299
           R  DL   + V NL  +  + ++ K F ++G ++++++ R+     P GF FV+F DP D
Sbjct: 30  RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89

Query: 300 AEDSVRGLDGTRCCGTRIRV 359
           A D+   +DG    G  + V
Sbjct: 90  AADAKHHMDGYLLLGRELTV 109


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = +3

Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344
           V NL  + S  ++E IF  YG I+ +    N     FVEF D R A+ +++ L+ T   G
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285

Query: 345 TRIRVEMS 368
            RI++E S
Sbjct: 286 KRIKLEHS 293


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 308
           D   KVYVGNL    +K  +E +FS+ G + +  V+R P      GF FV F    D E 
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++  L+ +   G +IRV
Sbjct: 234 AIVALNNSLLEGQKIRV 250



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320
           +VY+GN+    +  ++ K+  ++G +  V V     +     F F   +   DA   V  
Sbjct: 77  RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136

Query: 321 LDGTRCCGTRIRVEMS 368
           L+G    G  I+V ++
Sbjct: 137 LNGNTVEGREIKVNIT 152


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/67 (32%), Positives = 39/67 (58%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           ++V NL ++ S  E+  IFS YG IR V    +     ++EF D R A+ +++GL+G   
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356

Query: 339 CGTRIRV 359
            G ++++
Sbjct: 357 AGRQLKL 363


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
 Frame = +3

Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 293
           R  + +L  +++VG L  + ++ ++E  F +YG I    + V R+   P GF F+ F D 
Sbjct: 4   RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63

Query: 294 RDAEDSVRGLDG 329
           R A+D+++ + G
Sbjct: 64  RGADDAIKHMHG 75


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
 Frame = +3

Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 293
           R  + +L  +++VG L  + ++ ++E  F +YG I    + V R+   P GF F+ F D 
Sbjct: 4   RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63

Query: 294 RDAEDSVRGLDG 329
           R A+D+++ + G
Sbjct: 64  RGADDAIKHMHG 75


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/68 (30%), Positives = 38/68 (55%)
 Frame = +3

Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344
           VGN+ +N   YE++ +F ++G+I+ +  A    GF  V + D R A+++ R L      G
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280

Query: 345 TRIRVEMS 368
           T++ +  S
Sbjct: 281 TKLDIRYS 288



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +3

Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344
           V NL ++ S  E+ ++   YG ++ +    +     ++EF D R A  ++ GL+G    G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365

Query: 345 TRIRV 359
            ++++
Sbjct: 366 KKLQL 370


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299
           R+ DL   + V NL  +  + ++ + F ++G ++++++ R+     P GF F++F DP D
Sbjct: 31  RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90

Query: 300 AEDSVRGLDGTRCCGTRIRV 359
           A ++   +DG    G  + V
Sbjct: 91  AAEAKHQMDGYLLLGRELTV 110


>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
           similar to SP|P52298 20 kDa nuclear cap binding protein
           (CBP20) (NCBP interacting protein 1) {Homo sapiens};
           non-consensus AT donor splice site at exon 4, AC
           acceptor splice site at exon 5; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 257

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 314
           S  VY+GN+    ++ ++ ++FS+ G I+ + +      + P GF FV F    D ED+V
Sbjct: 33  STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92

Query: 315 RGLDGTRCCGTRIRVEMSNG 374
           + + GT      IRV+   G
Sbjct: 93  KYISGTILDDRPIRVDFDWG 112


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/66 (33%), Positives = 37/66 (56%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350
           N+ T  S  E+ ++F  YG IR +    N     F+E+ D RDAE +++ L+ +   G  
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335

Query: 351 IRVEMS 368
           I++E+S
Sbjct: 336 IKLELS 341


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 22/66 (33%), Positives = 37/66 (56%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350
           N+ T  S  E+ ++F  YG IR +    N     F+E+ D RDAE +++ L+ +   G  
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348

Query: 351 IRVEMS 368
           I++E+S
Sbjct: 349 IKLELS 354


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 93  FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-- 266
           F  PF  K +     +      VYV NL    +  E++  F +YG+I +  V R+  G  
Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS 264

Query: 267 --FAFVEFEDPRDAEDSVRGLDGTR 335
             F FV FE+P DA  +V  L+G +
Sbjct: 265 RCFGFVNFENPEDAARAVEALNGKK 289



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = +3

Query: 153 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 317
           C +YVG+L  N +  ++   F++   + +V V R+       G+ +V + +  DAE +++
Sbjct: 46  CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105

Query: 318 GLDGTRCCGTRIRVEMSN 371
            L+ +   G  IR+  S+
Sbjct: 106 KLNYSYLNGKMIRITYSS 123



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 326
           +YV NL    +  ++ ++F+++G I +  V R+P G +    FV F    +A   +  ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389

Query: 327 GTRCCGTRIRVEMS 368
           G    G  + V ++
Sbjct: 390 GKMVGGKPLYVALA 403


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
 Frame = +3

Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 296
           R R   L  K++VG+L   A++ E+E+IF ++G++ +V++ R+      G  FV++    
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262

Query: 297 DAEDSVRGLDGT 332
            A  ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274



 Score = 33.9 bits (74), Expect = 0.094
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320
           K++VG++   A++ EI   F ++GN+  V + ++       G  FV++   +DA+ ++R 
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 321 L 323
           L
Sbjct: 181 L 181


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
 Frame = +3

Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 296
           R R   L  K++VG+L   A++ E+E+IF ++G++ +V++ R+      G  FV++    
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262

Query: 297 DAEDSVRGLDGT 332
            A  ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274



 Score = 33.9 bits (74), Expect = 0.094
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320
           K++VG++   A++ EI   F ++GN+  V + ++       G  FV++   +DA+ ++R 
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 321 L 323
           L
Sbjct: 181 L 181


>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
           putative / heterogeneous nuclear ribonucleoprotein,
           putative similar to Polypyrimidine tract-binding protein
           1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
           (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
           sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 432

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 153 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           C V V NL  ++  + ++  +FS YGNI  + + RN P  A V+  D   AE +V  L G
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304

Query: 330 TRCCGTRIRVEMS 368
               G R+ V  S
Sbjct: 305 AMLFGKRLEVNFS 317


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323
           ++V  L   +S+ +I++ F  YG I+ V +  +     P G+AF+E+   RD + + +  
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199

Query: 324 DGTRCCGTRIRVEMSNG 374
           DG +  G R+ V++  G
Sbjct: 200 DGQKIDGRRVLVDVERG 216


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +3

Query: 267 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374
           +AFVEF DPRDA+D+   LDG    G+RI VE S G
Sbjct: 5   YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 40


>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 243

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +3

Query: 267 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374
           +AFVEF DPRDA+D+   LDG    G+RI VE S G
Sbjct: 5   YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 40


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320
           +VYVGNL        +E +FS+ G +    V     +    GF FV ++  ++ +++++ 
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query: 321 LDGTRCCGTRIRV 359
           LDG    G +IRV
Sbjct: 265 LDGADLDGRQIRV 277



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320
           K++VGNL  N    ++ ++F   GN+  V V          GF FV      + E + + 
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 321 LDGTRCCGTRIRV 359
            +G    G  +RV
Sbjct: 152 FNGYELDGRPLRV 164


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299
           R +D + ++YVGNL  +     +E++FS++G + +  V  +       GF FV+  +  +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260

Query: 300 AEDSVRGLDGTRCCGTRIRVEMS 368
              ++  LDG    G  I+V ++
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVA 283


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 326
           VYVG L  + ++  + ++FS YG++  V +   R+  G  + FV F + R A+D++  +D
Sbjct: 9   VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68

Query: 327 GTRCCGTRIRV 359
           G    G  +RV
Sbjct: 69  GKSIGGRAVRV 79


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314
           L  K++VG L  N S+ E++ +FSKYG I+++ + R       G AF+++E    A  ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163

Query: 315 RGLDG 329
             ++G
Sbjct: 164 ESING 168


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314
           L  K++VG L  N S+ E++ +FSKYG I+++ + R       G AF+++E    A  ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163

Query: 315 RGLDG 329
             ++G
Sbjct: 164 ESING 168


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
 Frame = +3

Query: 111 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAF 275
           I  + S + ++  S  VYVG +  + ++ ++  +FS+YG I +V + R+       GFAF
Sbjct: 22  ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81

Query: 276 VEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362
           + +ED R    +V  L+G    G  I+V+
Sbjct: 82  LAYEDQRSTILAVDNLNGALVLGRTIKVD 110


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
 Frame = +3

Query: 120 KMSRYREWDLSC-KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEF 284
           K+ +    D  C K++V N+   A+K E+ ++FS +G I+++ + +       G+AFVEF
Sbjct: 657 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716

Query: 285 EDPRDAEDSVRGLDGTRCCGTRIRVEMSN 371
              ++A ++ + L  T   G  + +E +N
Sbjct: 717 VTKQEALNAKKALASTHFYGRHLVLEWAN 745


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 311
           +S +++V  L    +   + ++FS +G I+   + R+     P GF F+ F+   DA  +
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 312 VRGLDGTRCCGTRIRVEMS 368
           ++ LDG    G  I VE++
Sbjct: 65  LKSLDGKIVDGRLIFVEVA 83


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299
           R ++ + +VYVGNL  +     +E++FS++G +    V  +       GF FV   D  +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297

Query: 300 AEDSVRGLDGTRCCGTRIRVEMS 368
             +++  LDG    G  IRV ++
Sbjct: 298 LNEAISALDGQNLEGRAIRVNVA 320


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
 Frame = +3

Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDG 329
           V N+  +    E+ + F ++G +R+V++ R+     P GFAFVEF D  DA ++ R ++ 
Sbjct: 51  VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110

Query: 330 TRCCGTRIRVEMSN 371
               G  I V +++
Sbjct: 111 RSFAGREITVVVAS 124


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 314
           S K++VG +  +  ++ + + FSKYG +    + V R      GFAFV F    +A +++
Sbjct: 33  SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query: 315 RGLDGTRCCGTRIRV 359
           + LDG    G RIRV
Sbjct: 93  Q-LDGQDLHGRRIRV 106


>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
           protein similar to SP|P52298 20 kDa nuclear cap binding
           protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1) {Homo sapiens}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 124

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 329
           +YV NL  N +  E+  IF KYG IR + +   +   G AFV +ED  DA+++V  L G
Sbjct: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 323
           ++YVGNL  N S+ ++ K+F  +G++  V V R+      GF FV+F    DA +++   
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345

Query: 324 DGTRCCGTRIRV 359
                 G  I+V
Sbjct: 346 GQLEIAGRAIKV 357



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 192 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRI 353
           K ++++  SK+G + +++V +N  GF ++ FE+ + A  + R L G    G  I
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMI 541


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 39/67 (58%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           V+VG L  + +   ++ +FS+YG I +V +        FV+F +   AE+++R L+G + 
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321

Query: 339 CGTRIRV 359
            GT +R+
Sbjct: 322 GGTTVRL 328


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305
           +Y+G +     + EIE  FS++G ++ V VARN        F F++FEDP  AE
Sbjct: 62  LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAEDSVRGLDGT 332
           ++VG L  N +  E++ IF ++G + +V +   PPG    FV++ +   AE ++  L+GT
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKASAEHALSVLNGT 318

Query: 333 RCCGTRIRV 359
           +  G  IR+
Sbjct: 319 QLGGQSIRL 327


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +3

Query: 120 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAF 275
           ++ R    D SC    K++VG L  N S+ E++ +FS+YG I+++ + R       G  F
Sbjct: 94  ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLF 153

Query: 276 VEFEDPRDAEDSVRGLDG 329
           +++E    A  ++  L+G
Sbjct: 154 LKYESKEQAVAAMEALNG 171


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314
           L  K++VG L  N S+ E++ +FS+YG I+++ + R       G  F+++E    A  ++
Sbjct: 98  LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157

Query: 315 RGLDG 329
             L+G
Sbjct: 158 EALNG 162


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 323
           K+YV  L    +K E+ ++FS+YG I ++++A +      G+AFV+F     A  +++ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267

Query: 324 DG 329
           +G
Sbjct: 268 NG 269



 Score = 33.9 bits (74), Expect = 0.094
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 242
           K+YV  +   A++Y+I ++F KYGN+  +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
 Frame = +3

Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287
           K  R +  +    +Y+ NL  + S+  + + F+++G I ++ +A++      G+AFV F+
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249

Query: 288 DPRDAEDSVRGLDGTR 335
           +P DA  +   ++GT+
Sbjct: 250 NPEDARRAAETVNGTK 265


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326
           VYV NL  + S  E+ K+F ++G   +  + R+      GF FV FE+  DA  +V  L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285

Query: 327 G 329
           G
Sbjct: 286 G 286



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323
           +YVG+L    +  ++ + F++ G + +V V R+       G+ +V +  P+DA  ++  L
Sbjct: 47  LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query: 324 DGTRCCGTRIRVEMS 368
           +     G  IRV  S
Sbjct: 107 NFMALNGRAIRVMYS 121



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 326
           +YV NL  + +  ++ + F+ +G I +  V R+P G +    FV F  P +A  ++  ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388

Query: 327 G 329
           G
Sbjct: 389 G 389


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323
           ++V N+ +N    E+  +F +YG+IR ++      GF  + + D R A  ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323
           ++V N+ +N    E+  +F +YG+IR ++      GF  + + D R A  ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326
           VYV NL  + +  +++  F +YG I +  V ++      GF FV FE+  DA  +V  L+
Sbjct: 31  VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90

Query: 327 G 329
           G
Sbjct: 91  G 91



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 317
           S  +YV NL  + S  ++++IFS +G + +  V R+P     G  FV F  P +A +++ 
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190

Query: 318 GLDG 329
            L G
Sbjct: 191 QLSG 194


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 314
           S K+++G L  +  +  ++  FS +G +  V +A +       GF FV+F +  DA  + 
Sbjct: 40  SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99

Query: 315 RGLDGTRCCGTRIRVEMS 368
             +DG    G  +R+  +
Sbjct: 100 DAMDGKGLLGRPLRISFA 117


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +3

Query: 153 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           CK ++VG +G N SK ++E+ FSK+G I +    R     AF+++ +  DA  + + ++G
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQA-KSMNG 306

Query: 330 TRCCGTRIRVE 362
               G+ +RV+
Sbjct: 307 KPMGGSFLRVD 317



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           S  ++VG+L    ++ ++ ++F +YG+I  + V  +  GFAF+ +    +A  +   L G
Sbjct: 17  SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75

Query: 330 TRCCGT 347
               GT
Sbjct: 76  ANLNGT 81


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320
           K+ + NL   A   +I+ +FS  G + +V++ +N     P GFAFV+F   +DA ++++ 
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391

Query: 321 LDG 329
            +G
Sbjct: 392 FNG 394


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320
           K+YV  L    ++  +   F ++GN+ ++      VA  P GFAF+ +E   +A  +++G
Sbjct: 78  KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137

Query: 321 LDGTRCCGTRIRVE 362
           + G    G  I VE
Sbjct: 138 MHGKFLDGRVIFVE 151


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN---PPGFAFVEFEDPRDAEDSVRG 320
           +++VG L    +  ++E+ FS++G+I +  + + R+     GF F+ F D R  ++S+R 
Sbjct: 8   RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67

Query: 321 LDGTRCCGTRI 353
           + G R  G R+
Sbjct: 68  MHG-RDFGDRV 77


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311
           +S K++VG L        +++ F+ +G +    V  +       GF FV F     A ++
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 312 VRGLDGTRCCGTRIRVEMS 368
           ++ +DG    G +IRV ++
Sbjct: 93  IKEMDGKELNGRQIRVNLA 111


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311
           +S K++VG L        +++ F+ +G +    V  +       GF FV F     A ++
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 312 VRGLDGTRCCGTRIRVEMS 368
           ++ +DG    G +IRV ++
Sbjct: 93  IKEMDGKELNGRQIRVNLA 111


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           ++VG +  +    ++ + FS++G + +V +     G  FV+F D + AED++  L+GT
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
 Frame = +3

Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287
           +++R+ E      +Y+ NL  +    +++++FS+YGN+ +  V  NP     GF FV + 
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380

Query: 288 DPRDAEDSVRGLDG 329
           +P +A  ++  ++G
Sbjct: 381 NPEEALRALSEMNG 394



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 326
           +Y G+L    ++  +  +F    N+ +V V R+      G+A++ F +P DA  ++  L+
Sbjct: 51  LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110

Query: 327 GTRCCGTRIRVEMSN 371
            T      IR+ +SN
Sbjct: 111 YTPLFDRPIRIMLSN 125



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 326
           VYV NL     + E+ K F K+G I +  V R+  G    F FV FE    A  +V  ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290

Query: 327 G 329
           G
Sbjct: 291 G 291


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 326
           VYV NL    +  E++K F KYG+I +  V ++  G    F FV F  P  A  +V  ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286

Query: 327 G 329
           G
Sbjct: 287 G 287



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
 Frame = +3

Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287
           ++SR+ +   S  +Y+ NL  + +  +++++FS+YGN+ +  V  N      GF FV + 
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376

Query: 288 DPRDAEDSVRGLDG 329
           +P +A  +++ ++G
Sbjct: 377 NPEEALLAMKEMNG 390



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 326
           +YVG+L  + ++  +  +F++   + N+ V R+      G+A+V F +P DA  ++  L+
Sbjct: 47  LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106

Query: 327 GTRCCGTRIRVEMSN 371
                   IR+ +SN
Sbjct: 107 YAPIRDRPIRIMLSN 121


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 153 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 317
           C++YV N+  +    ++  +F  +G + +V V+RNP      G  +V       A+ ++ 
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167

Query: 318 GLDGTRCCGTRIRVEMS 368
            LDGT   G  +RV  S
Sbjct: 168 SLDGTEVGGREMRVRYS 184



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 320
           KVYVGNL        +   FSK+G I +  V  +        FAF+ F    +  D+   
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271

Query: 321 LDGTRCCGTRIRV 359
            +GT+  G RI V
Sbjct: 272 FNGTQYEGRRIIV 284


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 314
           S K+++G +  +  +  + + F+KYG + +  V  +       GF FV F     A  ++
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 315 RGLDGTRCCGTRIRVEMSN 371
           + LDG    G  ++V  +N
Sbjct: 99  QALDGRDLHGRVVKVNYAN 117


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 150 SCK-VYVGNLGTNASKYEIEKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 323
           +C+ VYVGN+ T  ++  +++IF+  G +  +  + ++   + FV + D R A  ++  L
Sbjct: 57  TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116

Query: 324 DGTRCCGTRIRV 359
           +G    G  I+V
Sbjct: 117 NGRHLFGQPIKV 128



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +3

Query: 159 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 323
           ++VG+L    T+A+ Y+   +FS   + R +W  +     GF FV F + +DA+ ++  +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205

Query: 324 DGTRCCGTRIR 356
           +G      +IR
Sbjct: 206 NGKWLSSRQIR 216



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302
           VYVGNL    ++ ++ + F   G   I  V V R+  GF FV +    +A
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNTHPEA 315


>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
           spliceosomal protein U1A / U1snRNP-specific protein
           identical to GB:Z49991 U1snRNP-specific protein
           [Arabidopsis thaliana]
          Length = 250

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           ++V NL    +   ++ +F +Y   + V +    PG AFVEF D   +  +++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320
           +++VG+L   AS+ +++K+F   G +  V + +NP      G AF+ F     A+ +V+ 
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274

Query: 321 LDGTRCCGTRIRVEMS 368
           L      G +  V  S
Sbjct: 275 LKSPMINGKKCGVTAS 290


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 279 EFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374
           EF DPRDA+D+   LDG    G+RI VE S G
Sbjct: 20  EFGDPRDADDARHYLDGRDFDGSRITVEFSRG 51


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299
           D  C ++VG L  + ++  + ++ SKYG I+N+ + R+       G+ FVE+E  ++
Sbjct: 61  DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           D+  + +VG L        +E  F++YG++ +  +  +       GF FV F+D +  +D
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++ G++G    G  I V
Sbjct: 65  AIEGMNGQDLDGRSITV 81


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           D+  + +VG L        +E  F++YG++ +  +  +       GF FV F+D +  +D
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++ G++G    G  I V
Sbjct: 65  AIEGMNGQDLDGRSITV 81


>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 153

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 311
           +S K+++G L        +   F+ +G++    V V R      GF FV F D   A  +
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 312 VRGLDGTRCCGTRIRVEMSN 371
           +  +DG    G  IRV  +N
Sbjct: 93  ISEMDGKELNGRHIRVNPAN 112


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 158

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 311
           +S K+++G L        +   F+ +G++    V V R      GF FV F D   A  +
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 312 VRGLDGTRCCGTRIRVEMSN 371
           +  +DG    G  IRV  +N
Sbjct: 93  ISEMDGKELNGRHIRVNPAN 112


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 317
           S  VYV NL    +   +  +FS+YG + +V V R+      GF FV F +P +A+ ++ 
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260

Query: 318 GLDG 329
            L G
Sbjct: 261 SLCG 264



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 329
           +YV NL ++ +   +E++F  +G+I +  V        GF FV+F+  + A  +   L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173

Query: 330 TRCCGTRIRV 359
           +   G ++ V
Sbjct: 174 SMVYGKKLFV 183



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 326
           +YV NL  + ++  + +IF  YG I +  V         GF FV F +  +++ + R L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365

Query: 327 GTRCCGTRIRVEMS 368
           G    G  I V ++
Sbjct: 366 GFLVDGKPIVVRVA 379


>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 264 GFAFVEFEDPRDAEDSVRGLDGT 332
           G+AFV FED RDAED++R  D T
Sbjct: 10  GYAFVYFEDERDAEDAIRRTDNT 32


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311
           ++ K+Y GNL  N     + +I   + N   V V  N       GFAFV   +  D    
Sbjct: 83  VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142

Query: 312 VRGLDGTRCCGTRIRVEMSN 371
           +  LDGT   G  ++V  ++
Sbjct: 143 IDNLDGTEYLGRALKVNFAD 162



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 320
           K++VGNL    +   +   F + G++    V  +       G+ FV +    + E ++  
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237

Query: 321 LDGTRCCGTRIRVEMSNG 374
           LDG    G  IRV ++ G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314
           S  ++V +L  N ++  +++IF  +G + +V +A +     P G  +VEF+   DAE + 
Sbjct: 97  SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156

Query: 315 RGLDGTRCCGTRIR 356
             +DG +  G  ++
Sbjct: 157 LYMDGAQIDGKVVK 170


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314
           S  ++V +L  N ++  +++IF  +G + +V +A +     P G  +VEF+   DAE + 
Sbjct: 97  SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156

Query: 315 RGLDGTRCCGTRIR 356
             +DG +  G  ++
Sbjct: 157 LYMDGAQIDGKVVK 170


>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
           mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
           profile:PF00076  rrm:RNA recognition motif
          Length = 296

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           +++ NLG N ++ E++++ S+Y     + + AR     AF +FE+   A D++  L G
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320
           K+YVGNL  N S+ ++ +IF  +G +  V +  +P      GF F++F     ++ +   
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325

Query: 321 LDG-TRCCGTRIRV 359
           L+G     G  I+V
Sbjct: 326 LNGKLEIAGRTIKV 339



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 216 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323
           SKYG + +++V +N  GF ++ F+    A  + R +
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320
           ++YVGNL        +E +F++ G +    V     +    GF FV     ++ + ++  
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309

Query: 321 LDGTRCCGTRIRV 359
           L+G    G +IRV
Sbjct: 310 LNGADLDGRQIRV 322



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320
           K++VGNL  N    ++ ++F   GN+  V      V     GF FV      + E + + 
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 321 LDGTRCCGTRIRV 359
            +G    G  +RV
Sbjct: 160 FNGYEFEGRPLRV 172


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320
           ++YVGNL        +E +F++ G +    V     +    GF FV     ++ + ++  
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 321 LDGTRCCGTRIRV 359
           L+G    G +IRV
Sbjct: 318 LNGADLDGRQIRV 330



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320
           K++VGNL  N    ++ ++F   GN+  V      V     GF FV      + E + + 
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 321 LDGTRCCGTRIRV 359
            +G    G  +RV
Sbjct: 160 FNGYEFEGRPLRV 172


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 17/62 (27%), Positives = 39/62 (62%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326
           ++  ++VG L ++ +  ++++ FS++G I +V +     G  FV+F +  +AE+++  L+
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362

Query: 327 GT 332
           GT
Sbjct: 363 GT 364


>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 228

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           +++ NL    +   ++ +F +Y   + + +    PG AFVE+ED   +  +++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212


>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 229

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           +++ NL    +   ++ +F +Y   + + +    PG AFVE+ED   +  +++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213


>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 309

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 183 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362
           N    ++EK F  YG I NV + RN   FAF+++E   DA  ++   + ++     I VE
Sbjct: 67  NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 123



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 285 EDPRDAEDSVRGLDGTRC--CGTRIRVE 362
           ED RDAED++R LD       G R+RVE
Sbjct: 2   EDERDAEDAIRALDRFEFGRKGRRLRVE 29


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 323
           +YV NL  + +  +I  +FS +G +  V V      R   G AFV +    DA  + R +
Sbjct: 59  LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118

Query: 324 DGTRCCGTRIRVEMS 368
           D     G ++ V ++
Sbjct: 119 DAKILNGRKLTVSIA 133


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 16/58 (27%), Positives = 35/58 (60%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332
           ++VG L  + ++ ++ + FS +G + +V +     G  FV+F + + AE+++  L+GT
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 335
           N+    +  ++  +F+KYG + +V++ R+       GFAFV ++   +A  +V  LDG  
Sbjct: 22  NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81

Query: 336 CCGTRIRVEMS 368
             G  I V+ +
Sbjct: 82  VDGREITVQFA 92


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 335
           N+    +  ++  +F+KYG + +V++ R+       GFAFV ++   +A  +V  LDG  
Sbjct: 22  NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81

Query: 336 CCGTRIRVEMS 368
             G  I V+ +
Sbjct: 82  VDGREITVQFA 92


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 165 VGNLGTNA--SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           V N G +A  +   + ++F+ +  +      + P GF F+ FE   DA+ +++ L+G   
Sbjct: 73  VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132

Query: 339 CGTRIRVE 362
            G  I VE
Sbjct: 133 NGRLIFVE 140


>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314
           +C VY+GN+    S   +  I  + G + ++ + R+     P GFAF E+E    A+ +V
Sbjct: 6   NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65

Query: 315 RGLDG 329
           +   G
Sbjct: 66  KLFSG 70


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 320
           KVY GNLG N +   ++  F     +    V   RN     GF F+ FE   + + ++  
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279

Query: 321 LDGTRCCGTRIRVEMSN 371
           ++G    G  +R+ +++
Sbjct: 280 MNGVEVEGRALRLNLAS 296



 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 320
           ++YVGNL    +  E+ +IF + G + +V      V     GF FV      +A+++++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 321 LDGTRCCGTRIRV 359
            + ++  G  ++V
Sbjct: 177 FNSSQIGGRTVKV 189


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           K+++G L  + +     K F KYG I +  + R+     P GF F+ F DP
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 287
           K++VG + +  ++ E++  F+KYGN+    V R+       GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           K+++G L  + +     K F KYG I +  + R+     P GF F+ F DP
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 287
           K++VG + +  ++ E++  F+KYGN+    V R+       GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158


>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative similar to
           spliceosomal protein [Solanum tuberosum] GI:169589
          Length = 232

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           +++ NL    +   ++ +F +Y   + + +    PG AFVE+ED   A  +++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216


>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
           RNA binding protein GI:18181938 from (Arabidopsis
           thaliana); contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain 15450911 gb AY054536.1
          Length = 360

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 317
           K++VG +    S+  +++ FS+YG +    VA+      P GF FV F +  D   ++R
Sbjct: 7   KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65


>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
           PABP, putative contains similarity to poly(A)-binding
           protein II [Mus musculus] GI:2351846; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 227

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 317
           S  +YVGN+    +  E+++ F   G +  V +  +    P GFA+VEF +    ++S+ 
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI 161

Query: 318 GLDGTRCCGTRIRV 359
            L+ +   G +I+V
Sbjct: 162 -LNESELHGRQIKV 174


>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 391

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 317
           VYV NL ++ S  EIE+ F  +G I+   V     ++  G  +AFVEFED    E++++
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317


>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 450

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 317
           VYV NL ++ S  EIE+ F  +G I+   V     ++  G  +AFVEFED    E++++
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350
           NL    S   + +IF  YG I+ +          FVEF D RDA  +   ++G    G +
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQ 278

Query: 351 IRVEMS 368
           + +E S
Sbjct: 279 VVIEFS 284



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 222 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329
           YG++R V + R   G   V F D RDA+ +VR + G
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323
           VYVG L    S+  + ++F + G + NV+V ++        + F+E+    DA+ +++ L
Sbjct: 27  VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86

Query: 324 DGTRCCGTRIRVEMSN 371
           +  +  G  IRV  ++
Sbjct: 87  NMIKLHGKPIRVNKAS 102


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 16/62 (25%), Positives = 39/62 (62%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326
           ++  ++VG L ++ +  ++++ F+++G I +V +     G  FV+F +  +AE+++  L+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360

Query: 327 GT 332
           GT
Sbjct: 361 GT 362


>At5g65260.1 68418.m08209 polyadenylate-binding protein family
           protein / PABP family protein low similarity to
           poly(A)-binding protein II [Drosophila melanogaster]
           GI:6007612; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain
          Length = 220

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = +3

Query: 102 PFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGF 269
           P SI    +   E D    V+VGN+    +  E+++ F   G +  V +  +    P GF
Sbjct: 76  PASIAANQAGKEEVDAR-SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGF 134

Query: 270 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 359
           A+VEF +    +++++ L+ +   G +++V
Sbjct: 135 AYVEFVEVEAVQEALQ-LNESELHGRQLKV 163


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323
           +++G+L     +  +   FS+ G + +V V RN     P G+ F+EF     AE +++  
Sbjct: 26  LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85

Query: 324 DGTRCCGTRIRVEMS 368
           +GT+  GT +   ++
Sbjct: 86  NGTQMPGTELTFRLN 100


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326
           +Y+ NL    S+  +  +FS +G +    +A++      GFAF+EFE    A  ++  +D
Sbjct: 19  LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78

Query: 327 GTRCCGTRI 353
           G R  G +I
Sbjct: 79  G-RLIGQKI 86


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           K+++G +  +  +  + + FS +G +  V V R      P GF FV F DP
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323
           +YV  L    ++ ++E  F+K G + +V +  +P      GF F+  +   DA   +R L
Sbjct: 47  LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106

Query: 324 DGTRCCGTRIRVE 362
           D +   G  I VE
Sbjct: 107 DHSVLQGRVITVE 119


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323
           +YV  L    ++ ++E  F+K G + +V +  +P      GF F+  +   DA   +R L
Sbjct: 77  LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136

Query: 324 DGTRCCGTRIRVE 362
           D +   G  I VE
Sbjct: 137 DHSVLQGRVITVE 149


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305
           SCK+++G +    S+  +   F  +G +    + ++       GF FV F DP  AE
Sbjct: 5   SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305
           SCK+++G +    S+  +   F  +G +    + ++       GF FV F DP  AE
Sbjct: 5   SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 290
           D + K++VG L    +  E  K F KYG I +  + ++     P GF FV + D
Sbjct: 39  DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-GFAFVEFEDPRDAEDSVRGLDGTR 335
           ++VGNL     + E+   F ++G + ++  A  P   +AFV F    DA  ++  L G  
Sbjct: 25  LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82

Query: 336 CCGTRIRVEMS 368
             G  +R+E +
Sbjct: 83  LSGNPLRIEFA 93


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350
           NL    S   +  IF  YG ++ V          FVEF D RDA  ++R ++G    G  
Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKP 248

Query: 351 IRVEMS 368
           + ++ S
Sbjct: 249 MVIQFS 254


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 150 SCK-VYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRGL 323
           +C+ VYVGN+    ++  ++++F+  G + +   + +    + FV + D R A  ++  L
Sbjct: 52  TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSL 111

Query: 324 DGTRCCGTRIRV 359
           +G    G  I+V
Sbjct: 112 NGRHLFGQPIKV 123



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 284
           VYVGNL    S+ ++ + F   G   I  V V R+  GF FV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326
           VYVGN+    +  E++  F   G +  V +  +    P GFA+VEF +    +++++ L+
Sbjct: 91  VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149

Query: 327 GTRCCGTRIRV 359
            +   G +++V
Sbjct: 150 ESELHGRQLKV 160


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326
           VYVGN+    +  E++  F   G +  V +  +    P GFA+VEF +    +++++ L+
Sbjct: 91  VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149

Query: 327 GTRCCGTRIRV 359
            +   G +++V
Sbjct: 150 ESELHGRQLKV 160


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           ++  + +VG L    +  ++++ FS++G++ +  +  +       GF FV F+D +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++  ++G    G  I V
Sbjct: 63  AIEEMNGKELDGRVITV 79


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           ++  + +VG L    +  ++++ FS++G++ +  +  +       GF FV F+D +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++  ++G    G  I V
Sbjct: 63  AIEEMNGKELDGRVITV 79


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           ++  + +VG L    +  ++++ FS++G++ +  +  +       GF FV F+D +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 309 SVRGLDGTRCCGTRIRV 359
           ++  ++G    G  I V
Sbjct: 63  AIEEMNGKELDGRVITV 79


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305
           K+++G +  +  +  +++ F KYG++    + R+       GF F+ F DP  AE
Sbjct: 16  KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323
           +YV  L T  +  ++E  F+K G + + ++   P      GFAFV     +DAE  ++ L
Sbjct: 74  LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133

Query: 324 D 326
           +
Sbjct: 134 N 134


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323
           +YV  L T  +  ++E  F+K G + + ++   P      GFAFV     +DAE  ++ L
Sbjct: 73  LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132

Query: 324 D 326
           +
Sbjct: 133 N 133


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           K++VG +     + ++ + F+ YG +    V R+     P GF FV F DP
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320
           +VY+GNL  + ++ +I K+FS    I +V + +N       G+A V+F+D      +++ 
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320

Query: 321 LDGTRCCGTRIRV 359
           LD    CG  +++
Sbjct: 321 LDQQVICGRPVKI 333


>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 329
           +++GNLG N ++ E+  + S     + + + R       F+EFED   A +    L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323
           V V NL  +  + ++ ++F  +G +  V+VA +       GF FV F    DA+ ++  L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274

Query: 324 DGTRCCGTRIRVE 362
           +G       +RVE
Sbjct: 275 NGYGYDNLILRVE 287


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFEDPRDAEDSVRGLD 326
           +YV NL  +    ++E++FS++G I +  V V  N    G  FVEF    +A  ++  ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284

Query: 327 G 329
           G
Sbjct: 285 G 285


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 308
           KV+VG L  +  K  +   F KYG+I    +      R   G+ FV F+D + A    ED
Sbjct: 18  KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77

Query: 309 SVRGLDGTR 335
           S   ++G R
Sbjct: 78  STPIINGRR 86


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 159 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 323
           ++VG+L    T+A+ ++    F+   + R +W  +     GF FV F + +DA+ ++  +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209

Query: 324 DGTRCCGTRIR 356
           +G      +IR
Sbjct: 210 NGKWVSSRQIR 220



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302
           VYVGNL    ++ ++ ++F   G   I  V V R+  GF FV +    +A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308
           ++  + +VG L    +  ++++ FS++G++ +  +  +       GF FV F+D +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 309 SVRGLDGT 332
           ++  ++G+
Sbjct: 63  AIEEMNGS 70


>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) (2 copies)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 305
           RE  +   VYV ++  + ++  +  +FS  G + +  +  +P     FAFVEF D + A 
Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194

Query: 306 DSVRGLDGT 332
           +++  L GT
Sbjct: 195 EAL-SLGGT 202


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 308
           D   + ++G L    S   +   F KYG++    V     +    GF F+ F++ +  ++
Sbjct: 4   DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63

Query: 309 SVRGLDGTRCCGTRIRVE 362
           ++  ++G    G  I V+
Sbjct: 64  AIAAMNGMDLDGRTITVD 81


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 305
           RE  +   VYV ++  + ++  +  +FS  G + +  +  +P     FAFVEF D + A 
Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181

Query: 306 DSVRGLDGT 332
            S   L GT
Sbjct: 182 -SALSLGGT 189


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/67 (22%), Positives = 38/67 (56%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338
           ++VG +  + ++ +++ +F ++G + +V +        FV++ +   AE ++  L+GT+ 
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQL 338

Query: 339 CGTRIRV 359
            G  IR+
Sbjct: 339 GGQSIRL 345


>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
           putative BcDNA.LD24793, Drosophila melanogaster,
           EMBL:AF172637
          Length = 292

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGL 323
           K+Y+ NL    S  +I+++FS+ G+++   +    +    G A V F    DA  +V+  
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168

Query: 324 DGTRCCGTRIRVEM 365
           +  +  G  +++E+
Sbjct: 169 NNVQLDGKLMKIEI 182


>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
           protein
          Length = 116

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314
           S  ++V  +  ++++  + + FS+YG +  V V  +     P GFA+V F    +AE ++
Sbjct: 20  SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query: 315 RGLD 326
             L+
Sbjct: 80  LELN 83


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 305
           K+++G +  + ++  +++ FS +G +    + ++       GF FV F DP  AE
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 305
           K+++G +  + ++  +++ FS +G +    + ++       GF FV F DP  AE
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 323
           ++VG L    +  EIE + S+YG ++ +      V+    G+  VEF D   A     G+
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263

Query: 324 DG 329
           +G
Sbjct: 264 NG 265


>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
           protein
          Length = 748

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 284
           +++VG LG +  + ++ KIFS  G +  V +V      FA+++F
Sbjct: 11  RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54


>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           E DL  K+++G +  +  +  +   FS YG++    + R+       GF F+ F DP
Sbjct: 2   ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           E DL  K+++G +  +  +  +   FS YG++    + R+       GF F+ F DP
Sbjct: 2   ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293
           E DL  K+++G +  +  +  +   FS YG++    + R+       GF F+ F DP
Sbjct: 2   ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57


>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
           protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 519

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 219 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374
           K+G   +V V  + P G   V F+D RDA+  +  ++G      +I   + +G
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDDG 491


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-PPG----FAFVEFEDPRDAEDSVRGL 323
           ++V  L       ++  IFS++G + +  V R+   G    +AF+EFE+    E +   +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304

Query: 324 DGTRCCGTRIRVEMS 368
           D       RI V+ S
Sbjct: 305 DNALIDDRRIHVDFS 319


>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           is the location of EST 197B1T7 , gb|AA597386
          Length = 274

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 302
           KV+VG L        + + F +YG+I    V  +       G+ FV F DP  A
Sbjct: 25  KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 260
           V+VGNL     K  I K FSK+G + +V +   P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDS 311
           ++ K+++G L    ++  + + FSK G +         V+    GF FV F    +A+ +
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 312 VRGLDGTRCCGTRIRVE 362
           +   +G +  G  I V+
Sbjct: 92  LMEFNGQQLNGRTIFVD 108


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323
           V V NL  +    ++ ++F  +G +    VA +       GF FV F    DA+ ++  L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235

Query: 324 DGTRCCGTRIRVEMS 368
           +G       +RVE S
Sbjct: 236 NGYGYDNLILRVEWS 250


>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 285

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 302
           KV+VG L        + + F +YG I    V  +       G+ FV F DP  A
Sbjct: 25  KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 320
           +++VG L    ++ +I ++   +G +R   + +     N  G+AF  ++DP   + +   
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435

Query: 321 LDGTR 335
           L+G +
Sbjct: 436 LNGIK 440


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
 Frame = +3

Query: 159 VYVGNLG---TNASKYEIEKIF----SKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDS 311
           ++VG+L    T+A+ ++    F    S Y + R +W  +     GF FV F + +DA+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209

Query: 312 VRGLDGTRCCGTRIR 356
           +  ++G      +IR
Sbjct: 210 INEMNGKWVSSRQIR 224



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302
           VYVGNL    ++ ++ ++F   G   I  V V R+  GF FV +    +A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 323
           +YVG L    ++  +   F  +G+I++V    +        F FV F +  DA  ++  +
Sbjct: 15  LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74

Query: 324 DGTRCCGTRIRV 359
           DG    G  + V
Sbjct: 75  DGAELYGRVLTV 86


>At5g24440.1 68418.m02880 RNA-binding protein, putative
          Length = 320

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAEDSVRGLDG 329
           VYV ++    ++ ++  +F   G + +  +  +      FAF+EF D   A  ++R   G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR-KSG 197

Query: 330 TRCCGTRIRVEMS 368
           T      IRV MS
Sbjct: 198 TMFGSHPIRVFMS 210


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 339 SSVFHQVHEQSLQHHGGLRILQMQIRADFELPIRYVCYRI 220
           +   H +H+ S + HG L+   + +  DFE  +   C  +
Sbjct: 494 AQALHYIHQSSAKFHGNLKSTNILLGHDFEACVTDYCLSV 533


>At1g60095.1 68414.m06771 jacalin lectin family protein contains
           similarity to myrosinase-binding protein homolog
           [Arabidopsis thaliana] GI:2997767;
          Length = 531

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 222 YGNIRNVWVARNPPGFAFVEFEDPRDAE 305
           +  IRN+++  N  G AFV+F   +D++
Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314
           S  ++V  L    +   +   F+++G + +  V  +       GF FV +    D+   +
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 315 RGLDG 329
            G+DG
Sbjct: 115 AGMDG 119


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 363 FRHESWCHSSVFHQVHEQSLQHHGGLRILQMQIRAD 256
           F H  W  SSVF +   ++L H  G  ++ +   AD
Sbjct: 295 FPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSDAD 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,265
Number of Sequences: 28952
Number of extensions: 220730
Number of successful extensions: 884
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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