BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A14 (650 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 82 4e-16 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 78 4e-15 At2g24590.1 68415.m02936 splicing factor, putative similar to to... 77 8e-15 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 77 1e-14 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 74 7e-14 At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 7e-14 At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 7e-14 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 73 2e-13 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 73 2e-13 At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 70 1e-12 At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 70 2e-12 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 55 4e-08 At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 54 6e-08 At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 54 6e-08 At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 53 1e-07 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 52 3e-07 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 3e-06 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 3e-06 At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 48 4e-06 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 5e-06 At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 2e-05 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 2e-05 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 2e-05 At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 46 2e-05 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 46 2e-05 At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 45 5e-05 At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 45 5e-05 At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 45 5e-05 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 45 5e-05 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 7e-05 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 7e-05 At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 44 7e-05 At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 44 9e-05 At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 44 9e-05 At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 44 1e-04 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 1e-04 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 2e-04 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 43 2e-04 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 2e-04 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 43 2e-04 At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04 At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04 At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 3e-04 At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 4e-04 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 5e-04 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 5e-04 At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 6e-04 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 41 8e-04 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001 At2g47310.1 68415.m05906 flowering time control protein-related ... 40 0.002 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.003 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.003 At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.003 At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.003 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.003 At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.003 At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 39 0.003 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.003 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 39 0.003 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.004 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.004 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.004 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.004 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.004 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.006 At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.008 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.010 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.010 At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 37 0.010 At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.010 At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 37 0.010 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 37 0.013 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.013 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.013 At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.018 At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.018 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.018 At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.018 At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.018 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.018 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.018 At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 36 0.023 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.031 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.031 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.031 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.031 At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 36 0.031 At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 36 0.031 At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.041 At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.041 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.041 At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 35 0.054 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 35 0.054 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.054 At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.054 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.054 At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.054 At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.054 At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 35 0.054 At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.054 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.071 At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 34 0.071 At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 34 0.071 At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 34 0.071 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.071 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.071 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.094 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 34 0.094 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.12 At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.12 At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.12 At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.12 At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.16 At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.16 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.16 At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.16 At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.16 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 33 0.16 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.22 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.22 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.22 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.22 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.22 At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.22 At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.29 At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.29 At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.29 At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.29 At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.29 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 32 0.29 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.29 At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.38 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.38 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.50 At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.50 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.66 At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.66 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.88 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 30 1.2 At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 1.2 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 1.5 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 1.5 At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 1.5 At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 2.0 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.0 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.0 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.0 At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 2.0 At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 2.0 At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 2.0 At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.7 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 3.5 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 3.5 At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 3.5 At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 3.5 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 4.7 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 4.7 At5g24440.1 68418.m02880 RNA-binding protein, putative 28 6.2 At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 28 6.2 At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 28 6.2 At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 27 8.2 At4g13330.1 68417.m02083 expressed protein 27 8.2 >At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like SR protein (SRZ22) identical to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like SR protein [Arabidopsis thaliana] GI:3435094; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc knuckle; identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093 Length = 200 Score = 81.8 bits (193), Expect = 4e-16 Identities = 36/73 (49%), Positives = 50/73 (68%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 335 +VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62 Query: 336 CCGTRIRVEMSNG 374 G R+ + G Sbjct: 63 --GWRVEQSHNRG 73 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 78.2 bits (184), Expect = 4e-15 Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 +YVGNL + K E+E +F KYG I ++ + PPG+AFVEFEDPRDA+D++ G DG Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G R+RVE+++G Sbjct: 69 DFDGCRLRVEIAHG 82 >At2g24590.1 68415.m02936 splicing factor, putative similar to to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352 Length = 196 Score = 77.4 bits (182), Expect = 8e-15 Identities = 35/73 (47%), Positives = 49/73 (67%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 335 +VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++FED RDA D++R +DG Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN 62 Query: 336 CCGTRIRVEMSNG 374 G R+ + G Sbjct: 63 --GWRVEQSHNRG 73 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 76.6 bits (180), Expect = 1e-14 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G R+RVE+++G Sbjct: 69 DFDGHRLRVELAHG 82 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 76.6 bits (180), Expect = 1e-14 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G R+RVE+++G Sbjct: 69 DFDGHRLRVELAHG 82 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 76.6 bits (180), Expect = 1e-14 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G R+RVE+++G Sbjct: 69 DFDGHRLRVELAHG 82 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 74.1 bits (174), Expect = 7e-14 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 2/77 (2%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 323 S +YVGNL + ++EIE IF KYG I ++ V PP + FVEFE RDAED+++G Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65 Query: 324 DGTRCCGTRIRVEMSNG 374 DG G R+RVE+++G Sbjct: 66 DGYNLDGCRLRVELAHG 82 >At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 74.1 bits (174), Expect = 7e-14 Identities = 31/57 (54%), Positives = 42/57 (73%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326 +VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59 >At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 74.1 bits (174), Expect = 7e-14 Identities = 31/57 (54%), Positives = 42/57 (73%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326 +VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 72.9 bits (171), Expect = 2e-13 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 +YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G +RVE+++G Sbjct: 69 DFDGHHLRVELAHG 82 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 72.9 bits (171), Expect = 2e-13 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 +YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68 Query: 333 RCCGTRIRVEMSNG 374 G +RVE+++G Sbjct: 69 DFDGHHLRVELAHG 82 >At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 290 Score = 70.1 bits (164), Expect = 1e-12 Identities = 36/84 (42%), Positives = 54/84 (64%) Frame = +3 Query: 123 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 302 M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57 Query: 303 EDSVRGLDGTRCCGTRIRVEMSNG 374 +D+ LDG G+RI VE S G Sbjct: 58 DDARHYLDGRDFDGSRITVEFSRG 81 >At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 284 Score = 69.7 bits (163), Expect = 2e-12 Identities = 36/84 (42%), Positives = 54/84 (64%) Frame = +3 Query: 123 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 302 M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57 Query: 303 EDSVRGLDGTRCCGTRIRVEMSNG 374 +D+ LDG G+RI VE S G Sbjct: 58 DDARYYLDGRDFDGSRITVEASRG 81 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 55.2 bits (127), Expect = 4e-08 Identities = 26/58 (44%), Positives = 38/58 (65%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 VYVGN + ++E++FSK+G ++ V + G+AFV FED RDAED++R D T Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58 >At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 357 Score = 54.4 bits (125), Expect = 6e-08 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60 Query: 339 --CGTRIRVE 362 G R+RVE Sbjct: 61 GRTGRRLRVE 70 >At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 356 Score = 54.4 bits (125), Expect = 6e-08 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60 Query: 339 --CGTRIRVE 362 G R+RVE Sbjct: 61 GRTGRRLRVE 70 >At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 350 Score = 53.2 bits (122), Expect = 1e-07 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60 Query: 339 --CGTRIRVE 362 G R+RVE Sbjct: 61 GRKGRRLRVE 70 Score = 35.1 bits (77), Expect = 0.041 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = +3 Query: 183 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362 N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 164 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 52.0 bits (119), Expect = 3e-07 Identities = 25/56 (44%), Positives = 36/56 (64%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326 V+VGN + ++E++F KYG + V + G+AFV FED RDAED++R LD Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56 Score = 37.5 bits (83), Expect = 0.008 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 192 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362 +++IEK F YG + NV + RN F+FV+FE DA ++ ++ + VE Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 48.8 bits (111), Expect = 3e-06 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 311 ++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +AE + Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60 Query: 312 VRGLDGTRCCGTRIRVEM 365 V G+DG G R+ V++ Sbjct: 61 VSGMDGKELNGRRVSVKL 78 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 48.8 bits (111), Expect = 3e-06 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299 R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP D Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89 Query: 300 AEDSVRGLDGTRCCGTRIRV 359 A D+ +DG G + V Sbjct: 90 AADAKHHMDGYLLLGRELTV 109 >At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, gb:D86122 Length = 785 Score = 48.4 bits (110), Expect = 4e-06 Identities = 25/68 (36%), Positives = 37/68 (54%) Frame = +3 Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344 V NL + S ++E IF YG I+ + N FVEF D R A+ +++ L+ T G Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285 Query: 345 TRIRVEMS 368 RI++E S Sbjct: 286 KRIKLEHS 293 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 48.0 bits (109), Expect = 5e-06 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 308 D KVYVGNL +K +E +FS+ G + + V+R P GF FV F D E Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ L+ + G +IRV Sbjct: 234 AIVALNNSLLEGQKIRV 250 Score = 30.7 bits (66), Expect = 0.88 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320 +VY+GN+ + ++ K+ ++G + V V + F F + DA V Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136 Query: 321 LDGTRCCGTRIRVEMS 368 L+G G I+V ++ Sbjct: 137 LNGNTVEGREIKVNIT 152 >At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing protein Mei2-like protein - Arabidopsis thaliana, EMBL:D86122 Length = 907 Score = 46.4 bits (105), Expect = 2e-05 Identities = 22/67 (32%), Positives = 39/67 (58%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 ++V NL ++ S E+ IFS YG IR V + ++EF D R A+ +++GL+G Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356 Query: 339 CGTRIRV 359 G ++++ Sbjct: 357 AGRQLKL 363 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 46.4 bits (105), Expect = 2e-05 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Frame = +3 Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 293 R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63 Query: 294 RDAEDSVRGLDG 329 R A+D+++ + G Sbjct: 64 RGADDAIKHMHG 75 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 46.4 bits (105), Expect = 2e-05 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%) Frame = +3 Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 293 R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63 Query: 294 RDAEDSVRGLDG 329 R A+D+++ + G Sbjct: 64 RGADDAIKHMHG 75 >At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122 Length = 915 Score = 46.0 bits (104), Expect = 2e-05 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = +3 Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344 VGN+ +N YE++ +F ++G+I+ + A GF V + D R A+++ R L G Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280 Query: 345 TRIRVEMS 368 T++ + S Sbjct: 281 TKLDIRYS 288 Score = 37.5 bits (83), Expect = 0.008 Identities = 16/65 (24%), Positives = 34/65 (52%) Frame = +3 Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 344 V NL ++ S E+ ++ YG ++ + + ++EF D R A ++ GL+G G Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365 Query: 345 TRIRV 359 ++++ Sbjct: 366 KKLQL 370 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 46.0 bits (104), Expect = 2e-05 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299 R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP D Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90 Query: 300 AEDSVRGLDGTRCCGTRIRV 359 A ++ +DG G + V Sbjct: 91 AAEAKHQMDGYLLLGRELTV 110 >At5g44200.1 68418.m05408 nuclear cap-binding protein, putative similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens}; non-consensus AT donor splice site at exon 4, AC acceptor splice site at exon 5; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 257 Score = 44.8 bits (101), Expect = 5e-05 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 314 S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F D ED+V Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92 Query: 315 RGLDGTRCCGTRIRVEMSNG 374 + + GT IRV+ G Sbjct: 93 KYISGTILDDRPIRVDFDWG 112 >At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing protein Length = 830 Score = 44.8 bits (101), Expect = 5e-05 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350 N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335 Query: 351 IRVEMS 368 I++E+S Sbjct: 336 IKLELS 341 >At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing protein Length = 843 Score = 44.8 bits (101), Expect = 5e-05 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350 N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348 Query: 351 IRVEMS 368 I++E+S Sbjct: 349 IKLELS 354 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 44.8 bits (101), Expect = 5e-05 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +3 Query: 93 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-- 266 F PF K + + VYV NL + E++ F +YG+I + V R+ G Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS 264 Query: 267 --FAFVEFEDPRDAEDSVRGLDGTR 335 F FV FE+P DA +V L+G + Sbjct: 265 RCFGFVNFENPEDAARAVEALNGKK 289 Score = 34.7 bits (76), Expect = 0.054 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%) Frame = +3 Query: 153 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 317 C +YVG+L N + ++ F++ + +V V R+ G+ +V + + DAE +++ Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105 Query: 318 GLDGTRCCGTRIRVEMSN 371 L+ + G IR+ S+ Sbjct: 106 KLNYSYLNGKMIRITYSS 123 Score = 30.7 bits (66), Expect = 0.88 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 326 +YV NL + ++ ++F+++G I + V R+P G + FV F +A + ++ Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389 Query: 327 GTRCCGTRIRVEMS 368 G G + V ++ Sbjct: 390 GKMVGGKPLYVALA 403 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 44.4 bits (100), Expect = 7e-05 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Frame = +3 Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 296 R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++ Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262 Query: 297 DAEDSVRGLDGT 332 A ++ GL+GT Sbjct: 263 TAMAAIDGLNGT 274 Score = 33.9 bits (74), Expect = 0.094 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320 K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 321 L 323 L Sbjct: 181 L 181 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 44.4 bits (100), Expect = 7e-05 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Frame = +3 Query: 129 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 296 R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++ Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262 Query: 297 DAEDSVRGLDGT 332 A ++ GL+GT Sbjct: 263 TAMAAIDGLNGT 274 Score = 33.9 bits (74), Expect = 0.094 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320 K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 321 L 323 L Sbjct: 181 L 181 >At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative similar to Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo sapiens} SP|P26599, [Homo sapiens] GI:35770; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 432 Score = 44.4 bits (100), Expect = 7e-05 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 153 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 C V V NL ++ + ++ +FS YGNI + + RN P A V+ D AE +V L G Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304 Query: 330 TRCCGTRIRVEMS 368 G R+ V S Sbjct: 305 AMLFGKRLEVNFS 317 >At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 427 Score = 44.0 bits (99), Expect = 9e-05 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323 ++V L +S+ +I++ F YG I+ V + + P G+AF+E+ RD + + + Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 324 DGTRCCGTRIRVEMSNG 374 DG + G R+ V++ G Sbjct: 200 DGQKIDGRRVLVDVERG 216 >At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 249 Score = 44.0 bits (99), Expect = 9e-05 Identities = 21/36 (58%), Positives = 25/36 (69%) Frame = +3 Query: 267 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374 +AFVEF DPRDA+D+ LDG G+RI VE S G Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 40 >At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 243 Score = 43.6 bits (98), Expect = 1e-04 Identities = 21/36 (58%), Positives = 25/36 (69%) Frame = +3 Query: 267 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374 +AFVEF DPRDA+D+ LDG G+RI VE S G Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 40 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 43.6 bits (98), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320 +VYVGNL +E +FS+ G + V + GF FV ++ ++ +++++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 321 LDGTRCCGTRIRV 359 LDG G +IRV Sbjct: 265 LDGADLDGRQIRV 277 Score = 32.7 bits (71), Expect = 0.22 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320 K++VGNL N ++ ++F GN+ V V GF FV + E + + Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 321 LDGTRCCGTRIRV 359 +G G +RV Sbjct: 152 FNGYELDGRPLRV 164 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 43.2 bits (97), Expect = 2e-04 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299 R +D + ++YVGNL + +E++FS++G + + V + GF FV+ + + Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260 Query: 300 AEDSVRGLDGTRCCGTRIRVEMS 368 ++ LDG G I+V ++ Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVA 283 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 43.2 bits (97), Expect = 2e-04 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 326 VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R A+D++ +D Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68 Query: 327 GTRCCGTRIRV 359 G G +RV Sbjct: 69 GKSIGGRAVRV 79 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 43.2 bits (97), Expect = 2e-04 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314 L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++ Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163 Query: 315 RGLDG 329 ++G Sbjct: 164 ESING 168 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 43.2 bits (97), Expect = 2e-04 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314 L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++ Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163 Query: 315 RGLDG 329 ++G Sbjct: 164 ESING 168 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 43.2 bits (97), Expect = 2e-04 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Frame = +3 Query: 111 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAF 275 I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81 Query: 276 VEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362 + +ED R +V L+G G I+V+ Sbjct: 82 LAYEDQRSTILAVDNLNGALVLGRTIKVD 110 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 42.7 bits (96), Expect = 2e-04 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 5/89 (5%) Frame = +3 Query: 120 KMSRYREWDLSC-KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEF 284 K+ + D C K++V N+ A+K E+ ++FS +G I+++ + + G+AFVEF Sbjct: 657 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716 Query: 285 EDPRDAEDSVRGLDGTRCCGTRIRVEMSN 371 ++A ++ + L T G + +E +N Sbjct: 717 VTKQEALNAKKALASTHFYGRHLVLEWAN 745 >At3g46020.1 68416.m04979 RNA-binding protein, putative similar to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis}; SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 102 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 311 +S +++V L + + ++FS +G I+ + R+ P GF F+ F+ DA + Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64 Query: 312 VRGLDGTRCCGTRIRVEMS 368 ++ LDG G I VE++ Sbjct: 65 LKSLDGKIVDGRLIFVEVA 83 >At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 42.3 bits (95), Expect = 3e-04 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299 R ++ + +VYVGNL + +E++FS++G + V + GF FV D + Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297 Query: 300 AEDSVRGLDGTRCCGTRIRVEMS 368 +++ LDG G IRV ++ Sbjct: 298 LNEAISALDGQNLEGRAIRVNVA 320 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 42.3 bits (95), Expect = 3e-04 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%) Frame = +3 Query: 165 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDG 329 V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D DA ++ R ++ Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110 Query: 330 TRCCGTRIRVEMSN 371 G I V +++ Sbjct: 111 RSFAGREITVVVAS 124 >At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris] Length = 289 Score = 42.3 bits (95), Expect = 3e-04 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 314 S K++VG + + ++ + + FSKYG + + V R GFAFV F +A +++ Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92 Query: 315 RGLDGTRCCGTRIRV 359 + LDG G RIRV Sbjct: 93 Q-LDGQDLHGRRIRV 106 >At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing protein similar to SP|P52298 20 kDa nuclear cap binding protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 124 Score = 41.9 bits (94), Expect = 4e-04 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 329 +YV NL N + E+ IF KYG IR + + + G AFV +ED DA+++V L G Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 41.5 bits (93), Expect = 5e-04 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 323 ++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F DA +++ Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345 Query: 324 DGTRCCGTRIRV 359 G I+V Sbjct: 346 GQLEIAGRAIKV 357 Score = 35.5 bits (78), Expect = 0.031 Identities = 16/54 (29%), Positives = 31/54 (57%) Frame = +3 Query: 192 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRI 353 K ++++ SK+G + +++V +N GF ++ FE+ + A + R L G G I Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMI 541 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 41.5 bits (93), Expect = 5e-04 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 V+VG L + + ++ +FS+YG I +V + FV+F + AE+++R L+G + Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321 Query: 339 CGTRIRV 359 GT +R+ Sbjct: 322 GGTTVRL 328 >At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 222 Score = 41.1 bits (92), Expect = 6e-04 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305 +Y+G + + EIE FS++G ++ V VARN F F++FEDP AE Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 40.7 bits (91), Expect = 8e-04 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAEDSVRGLDGT 332 ++VG L N + E++ IF ++G + +V + PPG FV++ + AE ++ L+GT Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKASAEHALSVLNGT 318 Query: 333 RCCGTRIRV 359 + G IR+ Sbjct: 319 QLGGQSIRL 327 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%) Frame = +3 Query: 120 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAF 275 ++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R G F Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLF 153 Query: 276 VEFEDPRDAEDSVRGLDG 329 +++E A ++ L+G Sbjct: 154 LKYESKEQAVAAMEALNG 171 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 39.9 bits (89), Expect = 0.001 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 314 L K++VG L N S+ E++ +FS+YG I+++ + R G F+++E A ++ Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157 Query: 315 RGLDG 329 L+G Sbjct: 158 EALNG 162 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 39.5 bits (88), Expect = 0.002 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 323 K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F A +++ L Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267 Query: 324 DG 329 +G Sbjct: 268 NG 269 Score = 33.9 bits (74), Expect = 0.094 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 242 K+YV + A++Y+I ++F KYGN+ + Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 39.1 bits (87), Expect = 0.003 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Frame = +3 Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287 K R + + +Y+ NL + S+ + + F+++G I ++ +A++ G+AFV F+ Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFD 249 Query: 288 DPRDAEDSVRGLDGTR 335 +P DA + ++GT+ Sbjct: 250 NPEDARRAAETVNGTK 265 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 39.1 bits (87), Expect = 0.003 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326 VYV NL + S E+ K+F ++G + + R+ GF FV FE+ DA +V L+ Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285 Query: 327 G 329 G Sbjct: 286 G 286 Score = 32.3 bits (70), Expect = 0.29 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323 +YVG+L + ++ + F++ G + +V V R+ G+ +V + P+DA ++ L Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106 Query: 324 DGTRCCGTRIRVEMS 368 + G IRV S Sbjct: 107 NFMALNGRAIRVMYS 121 Score = 32.3 bits (70), Expect = 0.29 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 326 +YV NL + + ++ + F+ +G I + V R+P G + FV F P +A ++ ++ Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388 Query: 327 G 329 G Sbjct: 389 G 389 >At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323 ++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224 >At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 39.1 bits (87), Expect = 0.003 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323 ++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 38.7 bits (86), Expect = 0.003 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326 VYV NL + + +++ F +YG I + V ++ GF FV FE+ DA +V L+ Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90 Query: 327 G 329 G Sbjct: 91 G 91 Score = 38.3 bits (85), Expect = 0.004 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 317 S +YV NL + S ++++IFS +G + + V R+P G FV F P +A +++ Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190 Query: 318 GLDG 329 L G Sbjct: 191 QLSG 194 >At3g08000.1 68416.m00977 RNA-binding protein, putative similar to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 143 Score = 38.7 bits (86), Expect = 0.003 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 314 S K+++G L + + ++ FS +G + V +A + GF FV+F + DA + Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99 Query: 315 RGLDGTRCCGTRIRVEMS 368 +DG G +R+ + Sbjct: 100 DAMDGKGLLGRPLRISFA 117 >At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1056 Score = 38.7 bits (86), Expect = 0.003 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 153 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 CK ++VG +G N SK ++E+ FSK+G I + R AF+++ + DA + + ++G Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQA-KSMNG 306 Query: 330 TRCCGTRIRVE 362 G+ +RV+ Sbjct: 307 KPMGGSFLRVD 317 Score = 35.1 bits (77), Expect = 0.041 Identities = 18/66 (27%), Positives = 35/66 (53%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ + +A + L G Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75 Query: 330 TRCCGT 347 GT Sbjct: 76 ANLNGT 81 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 38.7 bits (86), Expect = 0.003 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 320 K+ + NL A +I+ +FS G + +V++ +N P GFAFV+F +DA ++++ Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391 Query: 321 LDG 329 +G Sbjct: 392 FNG 394 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 38.7 bits (86), Expect = 0.003 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320 K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E +A +++G Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137 Query: 321 LDGTRCCGTRIRVE 362 + G G I VE Sbjct: 138 MHGKFLDGRVIFVE 151 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 38.3 bits (85), Expect = 0.004 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN---PPGFAFVEFEDPRDAEDSVRG 320 +++VG L + ++E+ FS++G+I + + + R+ GF F+ F D R ++S+R Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67 Query: 321 LDGTRCCGTRI 353 + G R G R+ Sbjct: 68 MHG-RDFGDRV 77 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 38.3 bits (85), Expect = 0.004 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311 +S K++VG L +++ F+ +G + V + GF FV F A ++ Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92 Query: 312 VRGLDGTRCCGTRIRVEMS 368 ++ +DG G +IRV ++ Sbjct: 93 IKEMDGKELNGRQIRVNLA 111 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 38.3 bits (85), Expect = 0.004 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311 +S K++VG L +++ F+ +G + V + GF FV F A ++ Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92 Query: 312 VRGLDGTRCCGTRIRVEMS 368 ++ +DG G +IRV ++ Sbjct: 93 IKEMDGKELNGRQIRVNLA 111 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 38.3 bits (85), Expect = 0.004 Identities = 17/58 (29%), Positives = 34/58 (58%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 ++VG + + ++ + FS++G + +V + G FV+F D + AED++ L+GT Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 38.3 bits (85), Expect = 0.004 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = +3 Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287 +++R+ E +Y+ NL + +++++FS+YGN+ + V NP GF FV + Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380 Query: 288 DPRDAEDSVRGLDG 329 +P +A ++ ++G Sbjct: 381 NPEEALRALSEMNG 394 Score = 36.3 bits (80), Expect = 0.018 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 326 +Y G+L ++ + +F N+ +V V R+ G+A++ F +P DA ++ L+ Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110 Query: 327 GTRCCGTRIRVEMSN 371 T IR+ +SN Sbjct: 111 YTPLFDRPIRIMLSN 125 Score = 35.5 bits (78), Expect = 0.031 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 326 VYV NL + E+ K F K+G I + V R+ G F FV FE A +V ++ Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290 Query: 327 G 329 G Sbjct: 291 G 291 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 37.9 bits (84), Expect = 0.006 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 326 VYV NL + E++K F KYG+I + V ++ G F FV F P A +V ++ Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286 Query: 327 G 329 G Sbjct: 287 G 287 Score = 37.5 bits (83), Expect = 0.008 Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 4/74 (5%) Frame = +3 Query: 120 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 287 ++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV + Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376 Query: 288 DPRDAEDSVRGLDG 329 +P +A +++ ++G Sbjct: 377 NPEEALLAMKEMNG 390 Score = 36.3 bits (80), Expect = 0.018 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 326 +YVG+L + ++ + +F++ + N+ V R+ G+A+V F +P DA ++ L+ Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106 Query: 327 GTRCCGTRIRVEMSN 371 IR+ +SN Sbjct: 107 YAPIRDRPIRIMLSN 121 >At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris] Length = 293 Score = 37.5 bits (83), Expect = 0.008 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 153 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 317 C++YV N+ + ++ +F +G + +V V+RNP G +V A+ ++ Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167 Query: 318 GLDGTRCCGTRIRVEMS 368 LDGT G +RV S Sbjct: 168 SLDGTEVGGREMRVRYS 184 Score = 29.5 bits (63), Expect = 2.0 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 320 KVYVGNL + FSK+G I + V + FAF+ F + D+ Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271 Query: 321 LDGTRCCGTRIRV 359 +GT+ G RI V Sbjct: 272 FNGTQYEGRRIIV 284 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 37.1 bits (82), Expect = 0.010 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 314 S K+++G + + + + + F+KYG + + V + GF FV F A ++ Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98 Query: 315 RGLDGTRCCGTRIRVEMSN 371 + LDG G ++V +N Sbjct: 99 QALDGRDLHGRVVKVNYAN 117 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 37.1 bits (82), Expect = 0.010 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +3 Query: 150 SCK-VYVGNLGTNASKYEIEKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 323 +C+ VYVGN+ T ++ +++IF+ G + + + ++ + FV + D R A ++ L Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116 Query: 324 DGTRCCGTRIRV 359 +G G I+V Sbjct: 117 NGRHLFGQPIKV 128 Score = 36.3 bits (80), Expect = 0.018 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = +3 Query: 159 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 323 ++VG+L T+A+ Y+ +FS + R +W + GF FV F + +DA+ ++ + Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205 Query: 324 DGTRCCGTRIR 356 +G +IR Sbjct: 206 NGKWLSSRQIR 216 Score = 27.5 bits (58), Expect = 8.2 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302 VYVGNL ++ ++ + F G I V V R+ GF FV + +A Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNTHPEA 315 >At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / spliceosomal protein U1A / U1snRNP-specific protein identical to GB:Z49991 U1snRNP-specific protein [Arabidopsis thaliana] Length = 250 Score = 37.1 bits (82), Expect = 0.010 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 ++V NL + ++ +F +Y + V + PG AFVEF D + +++GL G Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235 >At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing protein Length = 809 Score = 37.1 bits (82), Expect = 0.010 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320 +++VG+L AS+ +++K+F G + V + +NP G AF+ F A+ +V+ Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274 Query: 321 LDGTRCCGTRIRVEMS 368 L G + V S Sbjct: 275 LKSPMINGKKCGVTAS 290 >At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 260 Score = 37.1 bits (82), Expect = 0.010 Identities = 18/32 (56%), Positives = 21/32 (65%) Frame = +3 Query: 279 EFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374 EF DPRDA+D+ LDG G+RI VE S G Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSRG 51 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 36.7 bits (81), Expect = 0.013 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 299 D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E ++ Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 36.7 bits (81), Expect = 0.013 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 D+ + +VG L +E F++YG++ + + + GF FV F+D + +D Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ G++G G I V Sbjct: 65 AIEGMNGQDLDGRSITV 81 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 36.7 bits (81), Expect = 0.013 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 D+ + +VG L +E F++YG++ + + + GF FV F+D + +D Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ G++G G I V Sbjct: 65 AIEGMNGQDLDGRSITV 81 >At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 153 Score = 36.3 bits (80), Expect = 0.018 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 311 +S K+++G L + F+ +G++ V V R GF FV F D A + Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92 Query: 312 VRGLDGTRCCGTRIRVEMSN 371 + +DG G IRV +N Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112 >At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 158 Score = 36.3 bits (80), Expect = 0.018 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 311 +S K+++G L + F+ +G++ V V R GF FV F D A + Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92 Query: 312 VRGLDGTRCCGTRIRVEMSN 371 + +DG G IRV +N Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 36.3 bits (80), Expect = 0.018 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 317 S VYV NL + + +FS+YG + +V V R+ GF FV F +P +A+ ++ Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260 Query: 318 GLDG 329 L G Sbjct: 261 SLCG 264 Score = 32.7 bits (71), Expect = 0.22 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 329 +YV NL ++ + +E++F +G+I + V GF FV+F+ + A + L G Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173 Query: 330 TRCCGTRIRV 359 + G ++ V Sbjct: 174 SMVYGKKLFV 183 Score = 29.5 bits (63), Expect = 2.0 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 326 +YV NL + ++ + +IF YG I + V GF FV F + +++ + R L+ Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365 Query: 327 GTRCCGTRIRVEMS 368 G G I V ++ Sbjct: 366 GFLVDGKPIVVRVA 379 >At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 224 Score = 36.3 bits (80), Expect = 0.018 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = +3 Query: 264 GFAFVEFEDPRDAEDSVRGLDGT 332 G+AFV FED RDAED++R D T Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNT 32 >At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. Length = 258 Score = 36.3 bits (80), Expect = 0.018 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 311 ++ K+Y GNL N + +I + N V V N GFAFV + D Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142 Query: 312 VRGLDGTRCCGTRIRVEMSN 371 + LDGT G ++V ++ Sbjct: 143 IDNLDGTEYLGRALKVNFAD 162 Score = 32.3 bits (70), Expect = 0.29 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 320 K++VGNL + + F + G++ V + G+ FV + + E ++ Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237 Query: 321 LDGTRCCGTRIRVEMSNG 374 LDG G IRV ++ G Sbjct: 238 LDGFELEGRAIRVNLAQG 255 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 36.3 bits (80), Expect = 0.018 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314 S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE + Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156 Query: 315 RGLDGTRCCGTRIR 356 +DG + G ++ Sbjct: 157 LYMDGAQIDGKVVK 170 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 36.3 bits (80), Expect = 0.018 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314 S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE + Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156 Query: 315 RGLDGTRCCGTRIR 356 +DG + G ++ Sbjct: 157 LYMDGAQIDGKVVK 170 >At3g13700.1 68416.m01731 RNA-binding protein, putative similar to mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam profile:PF00076 rrm:RNA recognition motif Length = 296 Score = 35.9 bits (79), Expect = 0.023 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 329 +++ NLG N ++ E++++ S+Y + + AR AF +FE+ A D++ L G Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 35.5 bits (78), Expect = 0.031 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320 K+YVGNL N S+ ++ +IF +G + V + +P GF F++F ++ + Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325 Query: 321 LDG-TRCCGTRIRV 359 L+G G I+V Sbjct: 326 LNGKLEIAGRTIKV 339 Score = 29.9 bits (64), Expect = 1.5 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 216 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 323 SKYG + +++V +N GF ++ F+ A + R + Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 35.5 bits (78), Expect = 0.031 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320 ++YVGNL +E +F++ G + V + GF FV ++ + ++ Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309 Query: 321 LDGTRCCGTRIRV 359 L+G G +IRV Sbjct: 310 LNGADLDGRQIRV 322 Score = 32.7 bits (71), Expect = 0.22 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320 K++VGNL N ++ ++F GN+ V V GF FV + E + + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 321 LDGTRCCGTRIRV 359 +G G +RV Sbjct: 160 FNGYEFEGRPLRV 172 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 35.5 bits (78), Expect = 0.031 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 320 ++YVGNL +E +F++ G + V + GF FV ++ + ++ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 321 LDGTRCCGTRIRV 359 L+G G +IRV Sbjct: 318 LNGADLDGRQIRV 330 Score = 32.7 bits (71), Expect = 0.22 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 320 K++VGNL N ++ ++F GN+ V V GF FV + E + + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 321 LDGTRCCGTRIRV 359 +G G +RV Sbjct: 160 FNGYEFEGRPLRV 172 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 35.5 bits (78), Expect = 0.031 Identities = 17/62 (27%), Positives = 39/62 (62%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326 ++ ++VG L ++ + ++++ FS++G I +V + G FV+F + +AE+++ L+ Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362 Query: 327 GT 332 GT Sbjct: 363 GT 364 >At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative non-consensus splice donor GC at exon 4; similar to spliceosomal protein (U2B) GI:169588 from [Solanum tuberosum] Length = 228 Score = 35.5 bits (78), Expect = 0.031 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 +++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212 >At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative non-consensus splice donor GC at exon 4; similar to spliceosomal protein (U2B) GI:169588 from [Solanum tuberosum] Length = 229 Score = 35.5 bits (78), Expect = 0.031 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 +++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213 >At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 309 Score = 35.1 bits (77), Expect = 0.041 Identities = 20/60 (33%), Positives = 31/60 (51%) Frame = +3 Query: 183 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 362 N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE Sbjct: 67 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 123 Score = 27.9 bits (59), Expect = 6.2 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +3 Query: 285 EDPRDAEDSVRGLDGTRC--CGTRIRVE 362 ED RDAED++R LD G R+RVE Sbjct: 2 EDERDAEDAIRALDRFEFGRKGRRLRVE 29 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 35.1 bits (77), Expect = 0.041 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 323 +YV NL + + +I +FS +G + V V R G AFV + DA + R + Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118 Query: 324 DGTRCCGTRIRVEMS 368 D G ++ V ++ Sbjct: 119 DAKILNGRKLTVSIA 133 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 35.1 bits (77), Expect = 0.041 Identities = 16/58 (27%), Positives = 35/58 (60%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 332 ++VG L + ++ ++ + FS +G + +V + G FV+F + + AE+++ L+GT Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 34.7 bits (76), Expect = 0.054 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 335 N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81 Query: 336 CCGTRIRVEMS 368 G I V+ + Sbjct: 82 VDGREITVQFA 92 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 34.7 bits (76), Expect = 0.054 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 335 N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81 Query: 336 CCGTRIRVEMS 368 G I V+ + Sbjct: 82 VDGREITVQFA 92 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 34.7 bits (76), Expect = 0.054 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 165 VGNLGTNA--SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 V N G +A + + ++F+ + + + P GF F+ FE DA+ +++ L+G Sbjct: 73 VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132 Query: 339 CGTRIRVE 362 G I VE Sbjct: 133 NGRLIFVE 140 >At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 173 Score = 34.7 bits (76), Expect = 0.054 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314 +C VY+GN+ S + I + G + ++ + R+ P GFAF E+E A+ +V Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65 Query: 315 RGLDG 329 + G Sbjct: 66 KLFSG 70 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 34.7 bits (76), Expect = 0.054 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 320 KVY GNLG N + ++ F + V RN GF F+ FE + + ++ Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279 Query: 321 LDGTRCCGTRIRVEMSN 371 ++G G +R+ +++ Sbjct: 280 MNGVEVEGRALRLNLAS 296 Score = 31.1 bits (67), Expect = 0.66 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 320 ++YVGNL + E+ +IF + G + +V V GF FV +A+++++ Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176 Query: 321 LDGTRCCGTRIRV 359 + ++ G ++V Sbjct: 177 FNSSQIGGRTVKV 189 >At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 358 Score = 34.7 bits (76), Expect = 0.054 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 K+++G L + + K F KYG I + + R+ P GF F+ F DP Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70 Score = 31.5 bits (68), Expect = 0.50 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 287 K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+ Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158 >At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 231 Score = 34.7 bits (76), Expect = 0.054 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 K+++G L + + K F KYG I + + R+ P GF F+ F DP Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70 Score = 31.5 bits (68), Expect = 0.50 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 287 K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+ Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158 >At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative similar to spliceosomal protein [Solanum tuberosum] GI:169589 Length = 232 Score = 34.7 bits (76), Expect = 0.054 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 +++ NL + ++ +F +Y + + + PG AFVE+ED A +++ L G Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216 >At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 Length = 360 Score = 34.7 bits (76), Expect = 0.054 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 317 K++VG + S+ +++ FS+YG + VA+ P GF FV F + D ++R Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 34.3 bits (75), Expect = 0.071 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 317 S +YVGN+ + E+++ F G + V + + P GFA+VEF + ++S+ Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI 161 Query: 318 GLDGTRCCGTRIRV 359 L+ + G +I+V Sbjct: 162 -LNESELHGRQIKV 174 >At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 391 Score = 34.3 bits (75), Expect = 0.071 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 317 VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++ Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317 >At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 450 Score = 34.3 bits (75), Expect = 0.071 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 317 VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++ Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376 >At3g26120.1 68416.m03257 RNA-binding protein, putative similar to GB:AAC39463 from [Zea mays], PF00076 RNA recognition motif (2 copies) Length = 615 Score = 34.3 bits (75), Expect = 0.071 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350 NL S + +IF YG I+ + FVEF D RDA + ++G G + Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQ 278 Query: 351 IRVEMS 368 + +E S Sbjct: 279 VVIEFS 284 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +3 Query: 222 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 329 YG++R V + R G V F D RDA+ +VR + G Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 34.3 bits (75), Expect = 0.071 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323 VYVG L S+ + ++F + G + NV+V ++ + F+E+ DA+ +++ L Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86 Query: 324 DGTRCCGTRIRVEMSN 371 + + G IRV ++ Sbjct: 87 NMIKLHGKPIRVNKAS 102 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 34.3 bits (75), Expect = 0.071 Identities = 16/62 (25%), Positives = 39/62 (62%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 326 ++ ++VG L ++ + ++++ F+++G I +V + G FV+F + +AE+++ L+ Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360 Query: 327 GT 332 GT Sbjct: 361 GT 362 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 33.9 bits (74), Expect = 0.094 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Frame = +3 Query: 102 PFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGF 269 P SI + E D V+VGN+ + E+++ F G + V + + P GF Sbjct: 76 PASIAANQAGKEEVDAR-SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGF 134 Query: 270 AFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 359 A+VEF + +++++ L+ + G +++V Sbjct: 135 AYVEFVEVEAVQEALQ-LNESELHGRQLKV 163 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 33.9 bits (74), Expect = 0.094 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 323 +++G+L + + FS+ G + +V V RN P G+ F+EF AE +++ Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85 Query: 324 DGTRCCGTRIRVEMS 368 +GT+ GT + ++ Sbjct: 86 NGTQMPGTELTFRLN 100 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 33.5 bits (73), Expect = 0.12 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326 +Y+ NL S+ + +FS +G + +A++ GFAF+EFE A ++ +D Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78 Query: 327 GTRCCGTRI 353 G R G +I Sbjct: 79 G-RLIGQKI 86 >At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 404 Score = 33.5 bits (73), Expect = 0.12 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 K+++G + + + + + FS +G + V V R P GF FV F DP Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57 >At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 129 Score = 33.5 bits (73), Expect = 0.12 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323 +YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106 Query: 324 DGTRCCGTRIRVE 362 D + G I VE Sbjct: 107 DHSVLQGRVITVE 119 >At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 382 Score = 33.5 bits (73), Expect = 0.12 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323 +YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136 Query: 324 DGTRCCGTRIRVE 362 D + G I VE Sbjct: 137 DHSVLQGRVITVE 149 >At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 33.1 bits (72), Expect = 0.16 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305 SCK+++G + S+ + F +G + + ++ GF FV F DP AE Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61 >At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 33.1 bits (72), Expect = 0.16 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305 SCK+++G + S+ + F +G + + ++ GF FV F DP AE Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 33.1 bits (72), Expect = 0.16 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 290 D + K++VG L + E K F KYG I + + ++ P GF FV + D Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92 >At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 823 Score = 33.1 bits (72), Expect = 0.16 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-GFAFVEFEDPRDAEDSVRGLDGTR 335 ++VGNL + E+ F ++G + ++ A P +AFV F DA ++ L G Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82 Query: 336 CCGTRIRVEMS 368 G +R+E + Sbjct: 83 LSGNPLRIEFA 93 >At1g67770.1 68414.m07733 RNA-binding protein, putative similar to terminal ear1 gb|AAC39463.1 Length = 527 Score = 33.1 bits (72), Expect = 0.16 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +3 Query: 171 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 350 NL S + IF YG ++ V FVEF D RDA ++R ++G G Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKP 248 Query: 351 IRVEMS 368 + ++ S Sbjct: 249 MVIQFS 254 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 33.1 bits (72), Expect = 0.16 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +3 Query: 150 SCK-VYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRGL 323 +C+ VYVGN+ ++ ++++F+ G + + + + + FV + D R A ++ L Sbjct: 52 TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSL 111 Query: 324 DGTRCCGTRIRV 359 +G G I+V Sbjct: 112 NGRHLFGQPIKV 123 Score = 27.9 bits (59), Expect = 6.2 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 284 VYVGNL S+ ++ + F G I V V R+ GF FV + Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 32.7 bits (71), Expect = 0.22 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326 VYVGN+ + E++ F G + V + + P GFA+VEF + +++++ L+ Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149 Query: 327 GTRCCGTRIRV 359 + G +++V Sbjct: 150 ESELHGRQLKV 160 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 32.7 bits (71), Expect = 0.22 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 326 VYVGN+ + E++ F G + V + + P GFA+VEF + +++++ L+ Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149 Query: 327 GTRCCGTRIRV 359 + G +++V Sbjct: 150 ESELHGRQLKV 160 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 32.7 bits (71), Expect = 0.22 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 ++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ ++G G I V Sbjct: 63 AIEEMNGKELDGRVITV 79 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 32.7 bits (71), Expect = 0.22 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 ++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ ++G G I V Sbjct: 63 AIEEMNGKELDGRVITV 79 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 32.7 bits (71), Expect = 0.22 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 ++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 309 SVRGLDGTRCCGTRIRV 359 ++ ++G G I V Sbjct: 63 AIEEMNGKELDGRVITV 79 >At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 455 Score = 32.7 bits (71), Expect = 0.22 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 305 K+++G + + + +++ F KYG++ + R+ GF F+ F DP AE Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70 >At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 141 Score = 32.3 bits (70), Expect = 0.29 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323 +YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133 Query: 324 D 326 + Sbjct: 134 N 134 >At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 140 Score = 32.3 bits (70), Expect = 0.29 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 323 +YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132 Query: 324 D 326 + Sbjct: 133 N 133 >At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 411 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 K++VG + + ++ + F+ YG + V R+ P GF FV F DP Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57 >At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing protein low similarity to nucleolar phosphoprotein (Nopp52), Tetrahymena thermophila, EMBL:TT51555; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 597 Score = 32.3 bits (70), Expect = 0.29 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 320 +VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D +++ Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320 Query: 321 LDGTRCCGTRIRV 359 LD CG +++ Sbjct: 321 LDQQVICGRPVKI 333 >At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA recognition motif, Pfam:PF00076; contains AT-AC splice sites at intron 8 Length = 339 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 329 +++GNLG N ++ E+ + S + + + R F+EFED A + L G Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 32.3 bits (70), Expect = 0.29 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323 V V NL + + ++ ++F +G + V+VA + GF FV F DA+ ++ L Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274 Query: 324 DGTRCCGTRIRVE 362 +G +RVE Sbjct: 275 NGYGYDNLILRVE 287 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 32.3 bits (70), Expect = 0.29 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFEDPRDAEDSVRGLD 326 +YV NL + ++E++FS++G I + V V N G FVEF +A ++ ++ Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284 Query: 327 G 329 G Sbjct: 285 G 285 >At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 31.9 bits (69), Expect = 0.38 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 308 KV+VG L + K + F KYG+I + R G+ FV F+D + A ED Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77 Query: 309 SVRGLDGTR 335 S ++G R Sbjct: 78 STPIINGRR 86 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 31.9 bits (69), Expect = 0.38 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +3 Query: 159 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 323 ++VG+L T+A+ ++ F+ + R +W + GF FV F + +DA+ ++ + Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209 Query: 324 DGTRCCGTRIR 356 +G +IR Sbjct: 210 NGKWVSSRQIR 220 Score = 28.3 bits (60), Expect = 4.7 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302 VYVGNL ++ ++ ++F G I V V R+ GF FV + +A Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 31.5 bits (68), Expect = 0.50 Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 5/68 (7%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 308 ++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 309 SVRGLDGT 332 ++ ++G+ Sbjct: 63 AIEEMNGS 70 >At3g14450.1 68416.m01831 RNA-binding protein, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies) Length = 327 Score = 31.5 bits (68), Expect = 0.50 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 305 RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194 Query: 306 DSVRGLDGT 332 +++ L GT Sbjct: 195 EAL-SLGGT 202 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 31.1 bits (67), Expect = 0.66 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = +3 Query: 144 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 308 D + ++G L S + F KYG++ V + GF F+ F++ + ++ Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63 Query: 309 SVRGLDGTRCCGTRIRVE 362 ++ ++G G I V+ Sbjct: 64 AIAAMNGMDLDGRTITVD 81 >At1g53650.1 68414.m06105 RNA-binding protein, putative similar to RNA-binding protein GB:AAA86641 GI:1174153 from [Arabidopsis thaliana] Length = 314 Score = 31.1 bits (67), Expect = 0.66 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +3 Query: 135 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 305 RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181 Query: 306 DSVRGLDGT 332 S L GT Sbjct: 182 -SALSLGGT 189 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 30.7 bits (66), Expect = 0.88 Identities = 15/67 (22%), Positives = 38/67 (56%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 338 ++VG + + ++ +++ +F ++G + +V + FV++ + AE ++ L+GT+ Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQL 338 Query: 339 CGTRIRV 359 G IR+ Sbjct: 339 GGQSIRL 345 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 30.3 bits (65), Expect = 1.2 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGL 323 K+Y+ NL S +I+++FS+ G+++ + + G A V F DA +V+ Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168 Query: 324 DGTRCCGTRIRVEM 365 + + G +++E+ Sbjct: 169 NNVQLDGKLMKIEI 182 >At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing protein Length = 116 Score = 30.3 bits (65), Expect = 1.2 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314 S ++V + ++++ + + FS+YG + V V + P GFA+V F +AE ++ Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79 Query: 315 RGLD 326 L+ Sbjct: 80 LELN 83 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 29.9 bits (64), Expect = 1.5 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 305 K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 29.9 bits (64), Expect = 1.5 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 305 K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61 >At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing protein Length = 573 Score = 29.9 bits (64), Expect = 1.5 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 323 ++VG L + EIE + S+YG ++ + V+ G+ VEF D A G+ Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263 Query: 324 DG 329 +G Sbjct: 264 NG 265 >At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing protein Length = 748 Score = 29.5 bits (63), Expect = 2.0 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 284 +++VG LG + + ++ KIFS G + V +V FA+++F Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 E DL K+++G + + + + FS YG++ + R+ GF F+ F DP Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 E DL K+++G + + + + FS YG++ + R+ GF F+ F DP Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 138 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 293 E DL K+++G + + + + FS YG++ + R+ GF F+ F DP Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57 >At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing protein similar to Tat-SF1 - Homo sapiens, GI:1667611; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 519 Score = 29.5 bits (63), Expect = 2.0 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 219 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 374 K+G +V V + P G V F+D RDA+ + ++G +I + +G Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDDG 491 >At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, putative Length = 506 Score = 29.5 bits (63), Expect = 2.0 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-PPG----FAFVEFEDPRDAEDSVRGL 323 ++V L ++ IFS++G + + V R+ G +AF+EFE+ E + + Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304 Query: 324 DGTRCCGTRIRVEMS 368 D RI V+ S Sbjct: 305 DNALIDDRRIHVDFS 319 >At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386 Length = 274 Score = 29.5 bits (63), Expect = 2.0 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 302 KV+VG L + + F +YG+I V + G+ FV F DP A Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78 >At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 501 Score = 29.1 bits (62), Expect = 2.7 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 260 V+VGNL K I K FSK+G + +V + P Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 28.7 bits (61), Expect = 3.5 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +3 Query: 147 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDS 311 ++ K+++G L ++ + + FSK G + V+ GF FV F +A+ + Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91 Query: 312 VRGLDGTRCCGTRIRVE 362 + +G + G I V+ Sbjct: 92 LMEFNGQQLNGRTIFVD 108 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 28.7 bits (61), Expect = 3.5 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 323 V V NL + ++ ++F +G + VA + GF FV F DA+ ++ L Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235 Query: 324 DGTRCCGTRIRVEMS 368 +G +RVE S Sbjct: 236 NGYGYDNLILRVEWS 250 >At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 285 Score = 28.7 bits (61), Expect = 3.5 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 302 KV+VG L + + F +YG I V + G+ FV F DP A Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78 >At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit GB:CAA77136 from [Nicotiana plumbaginifolia] Length = 589 Score = 28.7 bits (61), Expect = 3.5 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +3 Query: 156 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 320 +++VG L ++ +I ++ +G +R + + N G+AF ++DP + + Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435 Query: 321 LDGTR 335 L+G + Sbjct: 436 LNGIK 440 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 28.3 bits (60), Expect = 4.7 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Frame = +3 Query: 159 VYVGNLG---TNASKYEIEKIF----SKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDS 311 ++VG+L T+A+ ++ F S Y + R +W + GF FV F + +DA+ + Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209 Query: 312 VRGLDGTRCCGTRIR 356 + ++G +IR Sbjct: 210 INEMNGKWVSSRQIR 224 Score = 28.3 bits (60), Expect = 4.7 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 302 VYVGNL ++ ++ ++F G I V V R+ GF FV + +A Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 28.3 bits (60), Expect = 4.7 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 323 +YVG L ++ + F +G+I++V + F FV F + DA ++ + Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74 Query: 324 DGTRCCGTRIRV 359 DG G + V Sbjct: 75 DGAELYGRVLTV 86 >At5g24440.1 68418.m02880 RNA-binding protein, putative Length = 320 Score = 27.9 bits (59), Expect = 6.2 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = +3 Query: 159 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAEDSVRGLDG 329 VYV ++ ++ ++ +F G + + + + FAF+EF D A ++R G Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR-KSG 197 Query: 330 TRCCGTRIRVEMS 368 T IRV MS Sbjct: 198 TMFGSHPIRVFMS 210 >At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase (RKL1), Arabidopsis thaliana, EMBL:AF084034 Length = 660 Score = 27.9 bits (59), Expect = 6.2 Identities = 10/40 (25%), Positives = 19/40 (47%) Frame = -3 Query: 339 SSVFHQVHEQSLQHHGGLRILQMQIRADFELPIRYVCYRI 220 + H +H+ S + HG L+ + + DFE + C + Sbjct: 494 AQALHYIHQSSAKFHGNLKSTNILLGHDFEACVTDYCLSV 533 >At1g60095.1 68414.m06771 jacalin lectin family protein contains similarity to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; Length = 531 Score = 27.9 bits (59), Expect = 6.2 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 222 YGNIRNVWVARNPPGFAFVEFEDPRDAE 305 + IRN+++ N G AFV+F +D++ Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431 >At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI:1009363; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 156 Score = 27.5 bits (58), Expect = 8.2 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +3 Query: 150 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 314 S ++V L + + F+++G + + V + GF FV + D+ + Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114 Query: 315 RGLDG 329 G+DG Sbjct: 115 AGMDG 119 >At4g13330.1 68417.m02083 expressed protein Length = 428 Score = 27.5 bits (58), Expect = 8.2 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 363 FRHESWCHSSVFHQVHEQSLQHHGGLRILQMQIRAD 256 F H W SSVF + ++L H G ++ + AD Sbjct: 295 FPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSDAD 330 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,314,265 Number of Sequences: 28952 Number of extensions: 220730 Number of successful extensions: 884 Number of sequences better than 10.0: 168 Number of HSP's better than 10.0 without gapping: 776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 829 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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