Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A11
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   117   1e-27
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   1.8  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.4  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.1  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   7.3  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   7.3  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   9.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   9.6  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   9.6  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  117 bits (282), Expect = 1e-27
 Identities = 53/94 (56%), Positives = 68/94 (72%)
 Frame = +1

Query: 373 WFTESCDMWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 552
           WF E  +MWPG   + +VK+VL+  KSKY ++ VF++ + G VLVLDG IQ T++DEFSY
Sbjct: 15  WFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSY 74

Query: 553 QEMISFLPLCCHKNPXNVLIVGGGDGXVAREVAK 654
           QEMI+ L L  H NP  VL++GGGDG V REV K
Sbjct: 75  QEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVK 108


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 500 TFPKLVVSKTWIXWYFDFSVCSTSLTSNEKVPPGHISHDSVNQLVFSLSI 351
           T  KLV ++    W      C  S  +N  + PG +    VNQL+  +S+
Sbjct: 310 TLAKLVATQCHRLWLVQSPSCPPSPKNNAHLSPGSMGGVKVNQLLGVVSL 359


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 434 YCTQKNQNTXISKFLIQPVWGRFLSWTESYN 526
           +CTQK   + +SKF   P   R +  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 394 MWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKD 540
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVND 103


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 523 QCTQKDEFSYQEMISFLP 576
           +C+QKD   YQE  SF P
Sbjct: 326 RCSQKDAQIYQEWYSFFP 343


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 523 QCTQKDEFSYQEMISFLP 576
           +C+QKD   YQE  SF P
Sbjct: 280 RCSQKDAQIYQEWYSFFP 297


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 589 CGSIKAKMISFPDKKTHLSECI 524
           CGS K K  SFP K TH   C+
Sbjct: 257 CGSAKKKFHSFP-KCTHNDTCL 277


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 539 SF*VHCMI-PSKTRTFPKLVVSKTWIXWY 456
           SF V  +I PS+T    K  V KTW  W+
Sbjct: 806 SFSVLSLICPSRTLIIDKACVEKTWPYWW 834


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 249 IPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSI 142
           +P + Y   + P Y+LN+      NH+   Q  DSI
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNNMENHNTR-QYLDSI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,418
Number of Sequences: 5004
Number of extensions: 54334
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)