Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_A11
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 118 3e-27
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 107 8e-24
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 106 1e-23
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 79 2e-15
10_08_0120 + 14972010-14973197 32 0.46
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 30 1.9
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 28 5.7
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 118 bits (285), Expect = 3e-27
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +1
Query: 373 WFTESCDMWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 552
WF+E MWPG S +V++VL KS Y N+ VF +++ GKVLVLDG+IQ T++DE +Y
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAY 93
Query: 553 QEMISFLPLCCHKNPXNVLIVGGGDGXVAREVAK 654
QEMI+ LPLC K+P VL++GGGDG V REV++
Sbjct: 94 QEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSR 127
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 107 bits (257), Expect = 8e-24
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +1
Query: 394 MWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 573
MWPG S +V+ +L+ KS Y I VF++++ G VLVLDGI+Q T+KDE +YQEM++ L
Sbjct: 75 MWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHL 134
Query: 574 PLCCHKNPXNVLIVGGGDGXVAREVAK 654
PLC +P +VL+VGGGDG V RE+A+
Sbjct: 135 PLCSIPSPKSVLVVGGGDGGVLREIAR 161
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 106 bits (255), Expect = 1e-23
Identities = 46/87 (52%), Positives = 64/87 (73%)
Frame = +1
Query: 394 MWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 573
MWPG S +V+++L+ KS Y + VF++++ GKVLVLDGI+Q T KDE +YQEMI+ L
Sbjct: 86 MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHL 145
Query: 574 PLCCHKNPXNVLIVGGGDGXVAREVAK 654
PLC +P VL++GGGDG V RE+ +
Sbjct: 146 PLCSIPSPKKVLVIGGGDGGVLREICR 172
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/96 (40%), Positives = 52/96 (54%)
Frame = +1
Query: 367 TNWFTESCDMWPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEF 546
+ W+ E D + + VLH SKY I + DT GK L++DG +Q T+ DEF
Sbjct: 39 SKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGKALIIDGKMQSTEVDEF 96
Query: 547 SYQEMISFLPLCCHKNPXNVLIVGGGDGXVAREVAK 654
Y E + PL H NP V I+GGG+G AREV +
Sbjct: 97 IYHESLIHPPLLFHPNPKTVFIMGGGEGSAAREVLR 132
>10_08_0120 + 14972010-14973197
Length = 395
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 390 RYVAWGYFLIRSQRSTAHRKIKIPXYPSF*YNQFG---EGSCLGRNHTMHSER*VFLSGN 560
RY FL+ + TAHR + P F FG EG+ + + H E VF +
Sbjct: 196 RYATDVEFLVGGETFTAHRLVLAARSPVFMVELFGPMKEGTTVNKIHIFDMEAQVFRALL 255
Query: 561 DIIFAFMLPQ 590
I+ MLP+
Sbjct: 256 KFIYTDMLPE 265
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -1
Query: 233 IKTRFALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDL 108
+ T + T TL ++ I++Y+S +MI++I T+ ++NDL
Sbjct: 339 VVTILTMFTLITLYSTIIPISLYVSIEMIKFIQCTQFINNDL 380
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 427 KEVLHTEKSKYXNIQVFDTTSLGKVLVLDGII 522
K+ LH S Y N +V D +S G +V+DG++
Sbjct: 300 KKHLHGAFSTYKNYEVLDVSSNGGDVVVDGMV 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,593,098
Number of Sequences: 37544
Number of extensions: 298697
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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