Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A11
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)        88   7e-18
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)        80   2e-15
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)           35   0.067
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             34   0.089
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)
          Length = 294

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +1

Query: 487 SLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPXNVLIVGGGDGXVAREVAK 654
           S G VLVLDG+IQCT +DEFSYQEMIS LPL  H NP  VL++GGGDG V RE +K
Sbjct: 157 SFGTVLVLDGVIQCTDRDEFSYQEMISMLPLNSHPNPKKVLVIGGGDGGVIREASK 212


>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
          Length = 317

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = +1

Query: 415 SFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKN 594
           SFE+ EVL  +++   ++ +F     G V+ LDGIIQ T++DEF Y EM++  PL  H  
Sbjct: 194 SFEIGEVLFEQQTDSWHLIIFRNEEFGTVMALDGIIQTTERDEFIYHEMLTHTPLFAHGA 253

Query: 595 PXNVLIVGGGDGXVAREVAK 654
              VLI+GGGDG + REV K
Sbjct: 254 AKRVLIIGGGDGGILREVLK 273


>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
          Length = 453

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 394 MWPGGTFSFEVKEVLHTEKSKYXNIQVF----DTTSLGKVLVLDGIIQCTQKDEFSYQEM 561
           +WPG   +  +K++L +EKS     +VF    D T  GK +    +   T   +  YQ M
Sbjct: 132 LWPGPVSTEAIKDMLKSEKSSQMQ-RVFADSEDVTFTGKAVA--WLAAATDPSQCVYQLM 188

Query: 562 ISFLPLCCHKN 594
           ++  P+C + N
Sbjct: 189 VNHRPMCVYSN 199


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 330 VLIIKEKDG--QTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIKIPXYPSF*YNQFGEGS 503
           V +  +K G  QTK   V  ++R     YF+I+ +  T  R++++P  PSF  N   + +
Sbjct: 41  VRMCSKKSGADQTKRH-VLALLRAAFAIYFVIQIKERTVRRELEMPDQPSFDNNNLVQNT 99

Query: 504 CLGRNHTMHSER*VFLSGN 560
              + HT +     +L+GN
Sbjct: 100 ICSQEHTANGLS--YLNGN 116


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 409 TFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 576
           TF  ++K      + KY N  V  TTS G V   D ++ CT        +M+ F+P
Sbjct: 170 TFKDKIKLNETVARVKYNNTGVEVTTSSGDVYSADYVV-CTFSTGVLASDMVEFVP 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,730,919
Number of Sequences: 59808
Number of extensions: 370466
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)