Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A11
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...   118   5e-27
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...   118   5e-27
Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score =  118 bits (283), Expect = 5e-27
 Identities = 51/86 (59%), Positives = 67/86 (77%)
 Frame = +1

Query: 397 WPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 576
           WPG  FS +VK+VL  EKSKY ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43  WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102

Query: 577 LCCHKNPXNVLIVGGGDGXVAREVAK 654
           +  H +P  VLI+GGGDG + REV K
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLK 128


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score =  118 bits (283), Expect = 5e-27
 Identities = 51/86 (59%), Positives = 67/86 (77%)
 Frame = +1

Query: 397 WPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 576
           WPG  FS +VK+VL  EKSKY ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43  WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102

Query: 577 LCCHKNPXNVLIVGGGDGXVAREVAK 654
           +  H +P  VLI+GGGDG + REV K
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLK 128


>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 386 DSVNQLVFSLSIFFFN 339
           +SV QL+FS SIFFFN
Sbjct: 205 NSVIQLIFSSSIFFFN 220


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 315 SIADLVLIIKEKDGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIK 455
           S+ DL++ +KEK G  + + ++ ++  +      +  ++   HR +K
Sbjct: 547 SLRDLIITMKEKKGNFEEKKIWAMVVQMMLALRYLHKEKQIVHRDLK 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,432
Number of Sequences: 27780
Number of extensions: 296152
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)