BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A11 (656 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 118 5e-27 AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 118 5e-27 Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical pr... 27 8.9 U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 27 8.9 >AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical protein Y46G5A.19 protein. Length = 314 Score = 118 bits (283), Expect = 5e-27 Identities = 51/86 (59%), Positives = 67/86 (77%) Frame = +1 Query: 397 WPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 576 WPG FS +VK+VL EKSKY ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102 Query: 577 LCCHKNPXNVLIVGGGDGXVAREVAK 654 + H +P VLI+GGGDG + REV K Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLK 128 >AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine synthase protein. Length = 314 Score = 118 bits (283), Expect = 5e-27 Identities = 51/86 (59%), Positives = 67/86 (77%) Frame = +1 Query: 397 WPGGTFSFEVKEVLHTEKSKYXNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 576 WPG FS +VK+VL EKSKY ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102 Query: 577 LCCHKNPXNVLIVGGGDGXVAREVAK 654 + H +P VLI+GGGDG + REV K Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLK 128 >Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical protein C50C10.4 protein. Length = 340 Score = 27.5 bits (58), Expect = 8.9 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -1 Query: 386 DSVNQLVFSLSIFFFN 339 +SV QL+FS SIFFFN Sbjct: 205 NSVIQLIFSSSIFFFN 220 >U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical protein D1044.8 protein. Length = 981 Score = 27.5 bits (58), Expect = 8.9 Identities = 10/47 (21%), Positives = 25/47 (53%) Frame = +3 Query: 315 SIADLVLIIKEKDGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIK 455 S+ DL++ +KEK G + + ++ ++ + + ++ HR +K Sbjct: 547 SLRDLIITMKEKKGNFEEKKIWAMVVQMMLALRYLHKEKQIVHRDLK 593 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,364,432 Number of Sequences: 27780 Number of extensions: 296152 Number of successful extensions: 659 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 644 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 659 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1465835342 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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