BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A07 (626 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 28 0.96 SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 2.2 SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 25 9.0 SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.0 >SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 28.3 bits (60), Expect = 0.96 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +2 Query: 104 TTIMVVHKGNDEPMEIPINKMSQRKRFVIVNNHVKELQGEQDDTNKANKKEI 259 T I V EP E SQRKR I + V EL E D+ A +++I Sbjct: 124 TEIPKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKESDEKQNAYEEKI 175 >SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 27.1 bits (57), Expect = 2.2 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = -2 Query: 199 VIYNNKPLTLRHFIY 155 +I+NN PLTLR+ IY Sbjct: 346 IIFNNSPLTLRNSIY 360 >SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 178 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 215 QGEQDDTNKANKKEIIKQCSLQLDKMSXNSE 307 + E+D NK +KKE + + QL ++ N E Sbjct: 102 ENEKDKENKKSKKETVSSPAEQLLALTQNQE 132 >SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 991 Score = 25.0 bits (52), Expect = 9.0 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -2 Query: 214 QFFHVVIYNNKPLTLRHFIYWYFHRFIVTFMYYHYGC 104 Q FH I ++P +R + Y H +YY+ GC Sbjct: 598 QKFH--ISPDEPEKIREAVKHYVHGLCWVLLYYYQGC 632 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,186,432 Number of Sequences: 5004 Number of extensions: 38107 Number of successful extensions: 112 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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