Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A07
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    28   0.96 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.2  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.0  

>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 104 TTIMVVHKGNDEPMEIPINKMSQRKRFVIVNNHVKELQGEQDDTNKANKKEI 259
           T I  V     EP E      SQRKR  I  + V EL  E D+   A +++I
Sbjct: 124 TEIPKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKESDEKQNAYEEKI 175


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 199 VIYNNKPLTLRHFIY 155
           +I+NN PLTLR+ IY
Sbjct: 346 IIFNNSPLTLRNSIY 360


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 215 QGEQDDTNKANKKEIIKQCSLQLDKMSXNSE 307
           + E+D  NK +KKE +   + QL  ++ N E
Sbjct: 102 ENEKDKENKKSKKETVSSPAEQLLALTQNQE 132


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 214 QFFHVVIYNNKPLTLRHFIYWYFHRFIVTFMYYHYGC 104
           Q FH  I  ++P  +R  +  Y H      +YY+ GC
Sbjct: 598 QKFH--ISPDEPEKIREAVKHYVHGLCWVLLYYYQGC 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,432
Number of Sequences: 5004
Number of extensions: 38107
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)