Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A07
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6543| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   7.1  

>SB_6543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 236 NKANKKEIIKQCSLQLDKMSXNSEQNYQVNRFQSNEXINQ 355
           N+ NK+EI  +  +     S N E +Y+V R Q++  +N+
Sbjct: 56  NRRNKEEIKSKLDIHCPYQSSNVELDYKVRRVQADPSVNE 95


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +2

Query: 167 SQRKRFVIVNNHVKELQGEQDDTNKANKKEIIKQCSLQLDK 289
           + RKR   ++N V+ELQ E DD  K N+  ++K+ +++ ++
Sbjct: 169 ANRKRVTKLHNTVEELQQEVDDLRKENR--MLKKVNMRQER 207


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 625  MRVMYEFCXTYMFFEWHVD 569
            +RV+ E C TY+F EW  D
Sbjct: 3916 LRVIKEICKTYLFAEWCAD 3934


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 166 HFIYWYFHRFIVTFMYYHYGCY 101
           ++ Y+Y++ +   + YY+Y CY
Sbjct: 14  YYYYYYYYYYYYYYYYYYYCCY 35


>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 194 NNHVKELQGEQDDTNKANKKEIIKQCSLQLDKMSXNSEQNYQVNRFQSNEXINQ 355
           N   KE   +QD  NK +K+++ K+   ++DK    ++++ +    +  E ++Q
Sbjct: 8   NKEDKEEMDKQDKENKEDKEKMDKEDKEEMDKQDKENKEDKEEMDKEDKEEMDQ 61


>SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1510

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 101 VTTIMVVHKGNDEPMEIPINKMSQRKRFVIVNNHVKELQGEQDDTNKANKKEIIKQCSLQ 280
           VTT ++  +GN    +IP+   +   + V++    K L G   D +K++   +     +Q
Sbjct: 486 VTTSLISLRGNGGKCKIPVEVTNISDKPVVIKGRTK-LAGSIGDIDKSSFHGLFYLSGVQ 544

Query: 281 LDKMSXNSEQNYQVNRFQ 334
           L+        N  +NR Q
Sbjct: 545 LNS-DQKERVNIMLNRMQ 561


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 494 TDSEDECRCTKNKKIVFSDDGTQLPIDMPFEKHIC 598
           TD EDE  C     ++    G   P D  FEK +C
Sbjct: 365 TDGEDEQGCATTAPVITPSLGPPHPGDCNFEKDMC 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,125,253
Number of Sequences: 59808
Number of extensions: 276045
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)