BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A07 (626 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS2... 31 4.4 >BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS21 homolog (S. cerevisiae) protein. Length = 247 Score = 30.7 bits (66), Expect = 4.4 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +2 Query: 122 HKGNDEPMEIPINKMSQRKRFVIVN--NHVKELQGEQDDTN-KANKKEIIKQCSLQLDKM 292 H + P +IP K+ K+F+ + N + Q + K KE+ KQC LQ D+ Sbjct: 88 HVKEERPEKIPDLKLLVEKKFLALQSKNSDADFQNNEKFVQFKQQLKELKKQCGLQADRE 147 Query: 293 SXNSE 307 + +E Sbjct: 148 ADGTE 152 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 73,542,135 Number of Sequences: 237096 Number of extensions: 1231562 Number of successful extensions: 2392 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2349 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2392 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 6804036910 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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