Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A07
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    27   7.7  
At1g52990.1 68414.m05997 thioredoxin family protein similar to S...    27   7.7  

>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 83  DIVYFLVTTIMVVHKGNDEPMEIPINKMSQRKRFVIVNNHVKELQGEQDDTNKANKKEI 259
           D   F +    + +  N     +P++  S     V   NH+ E   E  DT   NKK+I
Sbjct: 213 DFQMFSLYNNSLENDNNQFGFSVPLSSSSSSNE-VCNPNHILEYISENSDTRNTNKKDI 270


>At1g52990.1 68414.m05997 thioredoxin family protein similar to
           SP|P48384 Thioredoxin M-type, chloroplast precursor
           (TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 313

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -3

Query: 573 SIGNCVPSSLKTIFLFLVHRHSS--SESVXKVLLRPXV--SVFNKCPYFLXXXFSTVL 412
           +I + +PS   T F+F  HR  +  ++++ K  ++     S+FN CP+FL     ++L
Sbjct: 141 TIKSWIPSFTSTEFIF-THREQNQCADTLVKKAIKSSTQWSLFNCCPHFLYPIVLSIL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,838
Number of Sequences: 28952
Number of extensions: 186136
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)