BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A04 (652 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_58485| Best HMM Match : COX2 (HMM E-Value=0) 184 7e-47 SB_14168| Best HMM Match : COX2 (HMM E-Value=0) 184 7e-47 SB_12233| Best HMM Match : COX2 (HMM E-Value=0) 128 4e-30 >SB_58485| Best HMM Match : COX2 (HMM E-Value=0) Length = 239 Score = 184 bits (447), Expect = 7e-47 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Frame = +3 Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293 V +LII K R+L++G ++E+I TIIPA LIFIA +T+ Sbjct: 46 VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105 Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467 K++GHQ Y YEYSD+ + +EFDSY++P+ ++ +FRLL+VD T Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165 Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESIS 647 A DVIHS +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++S Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225 Query: 648 I 650 + Sbjct: 226 L 226 >SB_14168| Best HMM Match : COX2 (HMM E-Value=0) Length = 239 Score = 184 bits (447), Expect = 7e-47 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Frame = +3 Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293 V +LII K R+L++G ++E+I TIIPA LIFIA +T+ Sbjct: 46 VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105 Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467 K++GHQ Y YEYSD+ + +EFDSY++P+ ++ +FRLL+VD T Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165 Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESIS 647 A DVIHS +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++S Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225 Query: 648 I 650 + Sbjct: 226 L 226 >SB_12233| Best HMM Match : COX2 (HMM E-Value=0) Length = 219 Score = 128 bits (309), Expect = 4e-30 Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Frame = +3 Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293 V +LII K R+L++G ++E+I TIIPA LIFIA +T+ Sbjct: 46 VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105 Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467 K++GHQ Y YEYSD+ + +EFDSY++P+ ++ +FRLL+VD T Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165 Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 578 A DVIHS +P+L +K+DA PGRLNQT FFI + F Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,873,133 Number of Sequences: 59808 Number of extensions: 198737 Number of successful extensions: 321 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 315 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1657237625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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