Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A04
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       184   7e-47
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       184   7e-47
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       128   4e-30

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  184 bits (447), Expect = 7e-47
 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
 Frame = +3

Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293
           V +LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESIS 647
           A DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++S
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225

Query: 648 I 650
           +
Sbjct: 226 L 226


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  184 bits (447), Expect = 7e-47
 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
 Frame = +3

Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293
           V +LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESIS 647
           A DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++S
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVS 225

Query: 648 I 650
           +
Sbjct: 226 L 226


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  128 bits (309), Expect = 4e-30
 Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
 Frame = +3

Query: 114 VRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITL 293
           V +LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+
Sbjct: 46  VLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTI 105

Query: 294 KSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXT 467
           K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               T
Sbjct: 106 KAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLIT 165

Query: 468 ATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 578
           A DVIHS  +P+L +K+DA PGRLNQT FFI +   F
Sbjct: 166 AADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,133
Number of Sequences: 59808
Number of extensions: 198737
Number of successful extensions: 321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)