Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A02
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    50   3e-07
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   4.0  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   5.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.1  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   9.3  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   9.3  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   9.3  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +3

Query: 72  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 251
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 252 ECXYGLFDFEY 284
           +C Y ++DFE+
Sbjct: 61  DCRYAIYDFEF 71



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKS 417
           K+  +SW PD A +   M+YSSS D L+++
Sbjct: 80  KIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +1

Query: 388 SSSFDALKKSLXRSSXVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHS 567
           SS+  ++  S   +  +H    P  SV       A   R P + I  R    T+P L +S
Sbjct: 208 SSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSNS 267


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 99  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDF 278
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 279 E 281
           +
Sbjct: 167 Q 167


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 298 WHWCVYSKSNRPYXHSP--VPPFCRSSRNCSYSALRSPTVSTSICF 167
           W++  Y+ S R Y  +   VPP+CR         +R+     + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 490 APRHRSPINSIYTRARDETEPALRHSCPDDTRXRHH*PL 606
           APR R P  ++ T A  E  P  +   P  TR     PL
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 81  TVSDACKTTYEEIKKDKKHRYV 146
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 78  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 182
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -3

Query: 350 HHDIRKSFCFLLASDVXLALVRVFKVKQAIXAFPGTALLQILEELFVF 207
           HH    S C L    + L  + +  +KQ +  + G+ +L++L +  +F
Sbjct: 192 HHIRIISKCSLKLKSMVLVSMIIPSIKQTLDFYSGSQILRLLNDFSMF 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,802
Number of Sequences: 5004
Number of extensions: 34341
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)