BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A02 (646 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 50 3e-07 SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 4.0 SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 5.3 SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3 SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 7.1 SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3 SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.3 SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.3 >SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|||Manual Length = 137 Score = 50.0 bits (114), Expect = 3e-07 Identities = 26/71 (36%), Positives = 39/71 (54%) Frame = +3 Query: 72 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 251 SGV VS C ++E+K K RYVVF + D K V + +++ FL DL + Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60 Query: 252 ECXYGLFDFEY 284 +C Y ++DFE+ Sbjct: 61 DCRYAIYDFEF 71 Score = 34.3 bits (75), Expect = 0.015 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKS 417 K+ +SW PD A + M+YSSS D L+++ Sbjct: 80 KIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109 >SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 664 Score = 26.2 bits (55), Expect = 4.0 Identities = 16/60 (26%), Positives = 24/60 (40%) Frame = +1 Query: 388 SSSFDALKKSLXRSSXVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHS 567 SS+ ++ S + +H P SV A R P + I R T+P L +S Sbjct: 208 SSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSNS 267 >SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr 2|||Manual Length = 319 Score = 25.8 bits (54), Expect = 5.3 Identities = 14/61 (22%), Positives = 31/61 (50%) Frame = +3 Query: 99 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDF 278 K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166 Query: 279 E 281 + Sbjct: 167 Q 167 >SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 357 Score = 25.8 bits (54), Expect = 5.3 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = -1 Query: 298 WHWCVYSKSNRPYXHSP--VPPFCRSSRNCSYSALRSPTVSTSICF 167 W++ Y+ S R Y + VPP+CR +R+ + CF Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167 >SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1334 Score = 25.4 bits (53), Expect = 7.1 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 490 APRHRSPINSIYTRARDETEPALRHSCPDDTRXRHH*PL 606 APR R P ++ T A E P + P TR PL Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62 >SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 366 Score = 25.0 bits (52), Expect = 9.3 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = +3 Query: 81 TVSDACKTTYEEIKKDKKHRYV 146 TV D C + IK KH YV Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337 >SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 584 Score = 25.0 bits (52), Expect = 9.3 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 182 VT D KT + +K KH+ V YIR K +D+ Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146 >SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 25.0 bits (52), Expect = 9.3 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = -3 Query: 350 HHDIRKSFCFLLASDVXLALVRVFKVKQAIXAFPGTALLQILEELFVF 207 HH S C L + L + + +KQ + + G+ +L++L + +F Sbjct: 192 HHIRIISKCSLKLKSMVLVSMIIPSIKQTLDFYSGSQILRLLNDFSMF 239 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,035,802 Number of Sequences: 5004 Number of extensions: 34341 Number of successful extensions: 104 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 289756512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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