Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_A02
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        31   1.1  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   5.7  
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             28   5.7  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      28   7.5  

>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
 Frame = +3

Query: 72  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 218
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 219 FLEDLQKGGTGECXYGLFDFEY 284
            LE L      E  Y L+D  +
Sbjct: 64  MLEKL---SDSEPRYILYDLNF 82


>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKK 414
           KL L+ WCPD   +   M+ +++F  +KK
Sbjct: 329 KLVLIFWCPDNCEIKSRMVSAATFQDVKK 357


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 283 YSKSNRPYXHSPVP-PFCRS--SRNCSYSALRSP 191
           YS  +RPY HSPV  P+C S   R   YS +  P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +1

Query: 442 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRXRH 594
           P DRP        +   P  RS   S Y   RD    A +  C D  R RH
Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 328 KLFLMSWCPDTAXVXXXMLYSSSF-DALKKSLXRSSXVHPSDR 453
           KL L+ WCPD   +   M+ +++F + +KK    +  +   DR
Sbjct: 82  KLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDR 124


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -3

Query: 332 SFCFLLASDVXLALV----RVFKVKQAIXAFPGTALLQILEELFVFGVAFANRLDVDLFL 165
           S CFL  + V L L+    R F  +  +  FP     + +    +  + F +R  VD+FL
Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500

Query: 164 V 162
           +
Sbjct: 501 I 501


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +3

Query: 72  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 230
           SG+ V D      + +K  K H+Y +F I DE  + V     ++V     E ++  F + 
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63

Query: 231 LQKGGTGECXYGLFDFEY 284
           ++K    E  Y L+D ++
Sbjct: 64  VEKLSDREPRYILYDMKF 81


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 470 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 589
           +E    K+ AT+    AFTH+L    KP  +SD P +  +G+
Sbjct: 22  EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,358
Number of Sequences: 59808
Number of extensions: 293172
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)