BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_A02 (646 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46 SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 31 1.1 SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 28 5.7 SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 28 5.7 SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 28 7.5 >SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 31.9 bits (69), Expect = 0.46 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%) Frame = +3 Query: 72 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 218 SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63 Query: 219 FLEDLQKGGTGECXYGLFDFEY 284 LE L E Y L+D + Sbjct: 64 MLEKL---SDSEPRYILYDLNF 82 >SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) Length = 387 Score = 30.7 bits (66), Expect = 1.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKK 414 KL L+ WCPD + M+ +++F +KK Sbjct: 329 KLVLIFWCPDNCEIKSRMVSAATFQDVKK 357 >SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = -1 Query: 283 YSKSNRPYXHSPVP-PFCRS--SRNCSYSALRSP 191 YS +RPY HSPV P+C S R YS + P Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145 >SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 692 Score = 28.7 bits (61), Expect = 4.3 Identities = 17/51 (33%), Positives = 19/51 (37%) Frame = +1 Query: 442 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRXRH 594 P DRP + P RS S Y RD A + C D R RH Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508 >SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 140 Score = 28.3 bits (60), Expect = 5.7 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 328 KLFLMSWCPDTAXVXXXMLYSSSF-DALKKSLXRSSXVHPSDR 453 KL L+ WCPD + M+ +++F + +KK + + DR Sbjct: 82 KLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDR 124 >SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) Length = 540 Score = 28.3 bits (60), Expect = 5.7 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = -3 Query: 332 SFCFLLASDVXLALV----RVFKVKQAIXAFPGTALLQILEELFVFGVAFANRLDVDLFL 165 S CFL + V L L+ R F + + FP + + + + F +R VD+FL Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500 Query: 164 V 162 + Sbjct: 501 I 501 >SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) Length = 151 Score = 28.3 bits (60), Expect = 5.7 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%) Frame = +3 Query: 72 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 230 SG+ V D + +K K H+Y +F I DE + V ++V E ++ F + Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63 Query: 231 LQKGGTGECXYGLFDFEY 284 ++K E Y L+D ++ Sbjct: 64 VEKLSDREPRYILYDMKF 81 >SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) Length = 409 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 470 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 589 +E K+ AT+ AFTH+L KP +SD P + +G+ Sbjct: 22 EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,171,358 Number of Sequences: 59808 Number of extensions: 293172 Number of successful extensions: 840 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 772 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 839 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1633044375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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