Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_A02
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 60 2e-09
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 58 4e-09
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 58 5e-09
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 57 1e-08
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 57 1e-08
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 55 4e-08
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 55 5e-08
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 55 5e-08
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 54 8e-08
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 53 2e-07
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 50 1e-06
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 50 1e-06
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 49 3e-06
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 44 7e-05
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.50
At3g21600.2 68416.m02725 senescence/dehydration-associated prote... 29 3.5
At3g21600.1 68416.m02724 senescence/dehydration-associated prote... 29 3.5
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 28 4.6
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 28 6.1
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 28 6.1
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 28 6.1
At5g28810.1 68418.m03542 hypothetical protein 27 8.1
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 8.1
At1g64430.1 68414.m07302 expressed protein 27 8.1
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 246 TGECXYGLFDFEY--THQCQ 299
EC Y ++DF++ CQ
Sbjct: 62 ADECRYAIYDFDFVTAENCQ 81
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++WCPD A V M+Y+SS D K+ L
Sbjct: 84 KIFFIAWCPDVAKVRSKMIYASSKDRFKREL 114
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +3
Query: 72 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLP---D 69
Query: 249 GECXYGLFDFEY--THQCQ 299
+C Y ++DF++ + CQ
Sbjct: 70 NDCRYAVYDFDFVTSENCQ 88
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F +W P T+ + +LYS+S D L + L
Sbjct: 91 KIFFFAWSPSTSGIRAKVLYSTSKDQLSREL 121
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 246 TGECXYGLFDFEY--THQCQ 299
EC Y ++DF++ CQ
Sbjct: 62 ADECRYAIYDFDFVTAENCQ 81
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++WCPD A V M+Y+SS D K+ L
Sbjct: 84 KIFFIAWCPDIAKVRSKMIYASSKDRFKREL 114
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 246 TGECXYGLFDFEY 284
EC Y +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 246 TGECXYGLFDFEY 284
EC Y +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
++F ++W PDTA V M+Y+SS D K+ L
Sbjct: 84 RIFFVAWSPDTARVRSKMIYASSKDRFKREL 114
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLP---P 60
Query: 249 GECXYGLFDFEYT 287
EC Y ++DF++T
Sbjct: 61 NECRYAVYDFDFT 73
Score = 34.3 bits (75), Expect = 0.070
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W PD++ V M+Y+SS D K+ L
Sbjct: 82 KIFFIAWSPDSSRVRMKMVYASSKDRFKREL 112
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 242
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIP-- 61
Query: 243 GTGECXYGLFDFEYTHQ--CQ 299
EC Y ++DF++T + CQ
Sbjct: 62 -DDECRYAVYDFDFTTEDNCQ 81
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W PDT+ V MLY+SS D K+ +
Sbjct: 84 KIFFIAWSPDTSRVRSKMLYASSKDRFKREM 114
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 242
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPE- 62
Query: 243 GTGECXYGLFDFEYT--HQCQ 299
EC Y ++D+++T CQ
Sbjct: 63 --DECRYAVYDYDFTTPENCQ 81
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W PDT+ V MLY+SS D K+ L
Sbjct: 84 KIFFIAWSPDTSRVRSKMLYASSKDRFKREL 114
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 254
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 255 CXYGLFDFEY--THQCQ 299
C Y ++DF++ CQ
Sbjct: 58 CRYAIYDFDFVTAENCQ 74
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++WCPD A V M+Y+SS D K+ L
Sbjct: 77 KIFFIAWCPDVAKVRSKMIYASSKDRFKREL 107
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/77 (37%), Positives = 38/77 (49%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLPADDC 63
Query: 249 GECXYGLFDFEYTHQCQ 299
C Y FDF CQ
Sbjct: 64 RYCIYD-FDFVTAENCQ 79
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W PDTA V M+Y+SS D K+ L
Sbjct: 82 KIFFIAWSPDTAKVRDKMIYASSKDRFKREL 112
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 257
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 258 XYGLFDFEY 284
Y +FDF++
Sbjct: 57 RYAVFDFDF 65
Score = 34.3 bits (75), Expect = 0.070
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W PD++ V M+Y+SS D K+ L
Sbjct: 75 KIFFIAWSPDSSRVRMKMVYASSKDRFKREL 105
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +3
Query: 63 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 236
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 237 KGGTGECXYGLFDFEY 284
+C Y +FDF++
Sbjct: 66 ---VDDCRYAVFDFDF 78
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W P+ + + +LY++S D L++ L
Sbjct: 88 KIFFIAWSPEASKIRAKILYATSKDGLRRVL 118
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 84 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECX 260
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +C
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPE---DDCR 57
Query: 261 YGLFDFEY 284
Y +FDF+Y
Sbjct: 58 YAVFDFDY 65
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 328 KLFLMSWCPDTAXVXXXMLYSSSFDALKKSL 420
K+F ++W P+ + + M+Y++S L++ L
Sbjct: 75 KIFFITWSPEASRIREKMMYATSKSGLRRVL 105
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDLQK 239
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 240 GGTGECXYGLFDFEY 284
EC Y + D E+
Sbjct: 60 --ADECRYAILDIEF 72
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 QKLFLMSWCPDTAXVXXXMLYSSSFDALKKSLXR-SSXVHPSDRPLGSVSGGRRR 486
+K+ ++W P TA + M+YSS+ D K+ L H +D S+ RRR
Sbjct: 77 RKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRR 131
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 183 ETVGERNAEYEQFLEDLQKGGTGE 254
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At3g21600.2 68416.m02725 senescence/dehydration-associated
protein-related similar to senescence-associated protein
12 [Hemerocallis hybrid cultivar]
gi|3551958|gb|AAC34857; similar to early-responsive to
dehydration stress ERD7 protein [Arabidopsis thaliana]
gi|15320412|dbj|BAB63916
Length = 299
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 174 IDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDFEYTHQCQXHVGG 314
ID + R +Y + GGTG G+F + Q H GG
Sbjct: 158 IDWQEFAPRIEDYNNVVAKAIAGGTGHIIRGIFSLSNAYSNQVHKGG 204
>At3g21600.1 68416.m02724 senescence/dehydration-associated
protein-related similar to senescence-associated protein
12 [Hemerocallis hybrid cultivar]
gi|3551958|gb|AAC34857; similar to early-responsive to
dehydration stress ERD7 protein [Arabidopsis thaliana]
gi|15320412|dbj|BAB63916
Length = 374
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 174 IDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDFEYTHQCQXHVGG 314
ID + R +Y + GGTG G+F + Q H GG
Sbjct: 158 IDWQEFAPRIEDYNNVVAKAIAGGTGHIIRGIFSLSNAYSNQVHKGG 204
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 340 MSWCPDTAXVXXXMLYSSSFDALKKSLXRSSXVHPSDRPLGSVSGGRRREAPRHRSP 510
MS C Y + L++S +S +H S S+SG RRR PR +SP
Sbjct: 94 MSTCSSNVSSQVLDRYIDGEEHLERSKQKSGSLHSS-----SLSGSRRRLPPRAQSP 145
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 385 YSSSFDALKKSLXRSSXVHPSDRPLGSVSGGRR--REAPRHRSPINSIYTRARDETEPAL 558
YSS++D +S + HPS P+ S + GR+ + R S I Y R+ DE AL
Sbjct: 29 YSSAWD---QSSYYQTPNHPSASPVSSYNSGRQTPKNLERKYSRIADNY-RSIDEVTAAL 84
Query: 559 RHS 567
H+
Sbjct: 85 SHA 87
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 385 YSSSFDALKKSLXRSSXVHPSDRPLGSVSGGRR--REAPRHRSPINSIYTRARDETEPAL 558
YSS++D +S + HPS P+ S + GR+ + R S I Y R+ DE AL
Sbjct: 49 YSSAWD---QSSYYQTPNHPSASPVSSYNSGRQTPKNLERKYSRIADNY-RSIDEVTAAL 104
Query: 559 RHS 567
H+
Sbjct: 105 SHA 107
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 385 YSSSFDALKKSLXRSSXVHPSDRPLGSVSGGRR--REAPRHRSPINSIYTRARDETEPAL 558
YSS++D +S + HPS P+ S + GR+ + R S I Y R+ DE AL
Sbjct: 29 YSSAWD---QSSYYQTPNHPSASPVSSYNSGRQTPKNLERKYSRIADNY-RSIDEVTAAL 84
Query: 559 RHS 567
H+
Sbjct: 85 SHA 87
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 567 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 475
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 615 NNTKRLVVSXPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 484
N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 692 NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 580 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 491
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,882
Number of Sequences: 28952
Number of extensions: 192686
Number of successful extensions: 685
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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