Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P24
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   1.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.2  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.1  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   9.1  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    25   9.1  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 141 TVDAPVTWFRETVVEPN-QKKYPCVSSKLPSC 233
           T+D   +W R+ ++E N QK++ C S+ +  C
Sbjct: 132 TIDISSSW-RQNIIENNEQKEFECTSTAITGC 162


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 175 LLSNQTRRSTLAYHQNYRRVPTIDQCYDD 261
           LLSNQTRRS+LA    +    ++D    D
Sbjct: 636 LLSNQTRRSSLARSYRFEEQLSVDDNTSD 664


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 199 FFWFGSTTVSRNHVTGASTVL*RALQNALNTLSSGGFPSLYHIKIE-ISLF 50
           FF+  S + +    + A T L  AL+      + G  P LYH +   ISLF
Sbjct: 390 FFFLSSISPNNVAASSAKTSLFIALKRCFGKTNDGSNPCLYHKESSAISLF 440


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -3

Query: 235 VHDGSFDDTQGYF--FWFGST 179
           +H+ +FD ++GY+   W GST
Sbjct: 65  IHESTFDPSKGYYSRLWTGST 85


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +1

Query: 469 GDARKAYMKH---KHPMVWERPNGPLSHLTN 552
           G + KA+ KH    H  +W +P G L   TN
Sbjct: 350 GPSSKAFQKHIQRLHDFMWVQPEGMLMRGTN 380


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 389 LNAGLFGTSTSLLRKLGSLNMVTSVL 466
           +N+G++  STS L    ++NMVT  L
Sbjct: 134 VNSGMWSASTSFLPSSFAMNMVTLAL 159


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 490 MKHKHPMVWERPNGPLSHLTN 552
           M++ +  + + P GP+SHL N
Sbjct: 80  MENNYKKILQNPRGPVSHLIN 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,885
Number of Sequences: 5004
Number of extensions: 46658
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)