Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P24
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)                       38   0.005
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         29   4.2  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)                      28   5.5  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)
          Length = 141

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +1

Query: 229 RVPTIDQCYDDDVVCDFEANAQFKRDRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLW 408
           R P+ ++    D V   EA  Q+  DR V  E +  LR +   C   E+ +    CR++ 
Sbjct: 14  RAPSFEEIDRRDPVAFSEAREQWVLDRLVELETVKELRDQVAHCYRQEEVNARQNCRTIV 73

Query: 409 DKYKSAEEAW 438
           D+Y  A +A+
Sbjct: 74  DQYMQAFKAY 83


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 379 DHATKCRSLWDKYKSAEEAWFIKYGDLGAYGDARKAYMKHKHPMV 513
           D AT   +L  ++K AEE   + +G  G+YG    AY++ K+P V
Sbjct: 127 DFATLIPALKKQFK-AEEKPVVSFG--GSYGGMLSAYLRFKYPNV 168


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 96  PDDNVFRAFCNALYNTVDAPVTWFRE 173
           P+D + R  C+++ + V AP+TW R+
Sbjct: 618 PEDEIKRLSCDSIASRVIAPLTWPRD 643


>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 789

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 122 LQCSLQYSRCSGNMVPRNCCRTKP 193
           L C+ ++ RC  ++  RNC R KP
Sbjct: 764 LSCNRRHKRCHASVTLRNCERVKP 787


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -1

Query: 477  RITISTEVTIFNEPSFLSRLVLVPKRPAFSCMVWLLIHHAIF 352
            ++T+ T +T   +  FLS ++ VP+ P +   ++  + +++F
Sbjct: 1119 KVTMETNITNMGQCLFLSDVMAVPEGPTYVTTIFTCLLNSVF 1160


>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 107 CV*SILQCSL-QYSRCSGNMVPRNCCRTKPEEVPLRIIKTTVV 232
           CV  + +C + + SRC    + R+CC  +   V + +I  TVV
Sbjct: 177 CVRRLTRCCVCRLSRCCVRRLSRSCCVRRLAAVVVSVILATVV 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,416,485
Number of Sequences: 59808
Number of extensions: 369879
Number of successful extensions: 1597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)