Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P24
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-3|CAB01876.1|  260|Caenorhabditis elegans Hypothetical pr...   107   7e-24
AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical...    29   2.1  
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    29   2.1  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    29   2.8  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    29   3.7  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    28   4.9  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z79600-3|CAB01876.1|  260|Caenorhabditis elegans Hypothetical
           protein F59C6.5 protein.
          Length = 260

 Score =  107 bits (257), Expect = 7e-24
 Identities = 48/104 (46%), Positives = 65/104 (62%)
 Frame = +1

Query: 211 YHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVXSEILSILRQRYEDCMMYEQPDHAT 390
           YH+   RVP ID+C  +D  C +EAN Q++ D+ V   IL  LRQR + CM+Y  PDH +
Sbjct: 68  YHRQLTRVPEIDECGVNDKACFYEANEQYRLDKMVDGFILQTLRQRVDRCMLYNNPDH-S 126

Query: 391 KCRSLWDKYKSAEEAWFIKYGDLGAYGDARKAYMKHKHPMVWER 522
            C  + +  +  E  +F+KYG+LG   D R AYMK KH M+WER
Sbjct: 127 PCAKVIEDMEENELNFFMKYGELGGESDVRDAYMKQKHRMIWER 170



 Score = 34.3 bits (75), Expect = 0.074
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 NVFRAFCNALYNTVDAPVTWFRETVVEPNQKK 200
           +++  F    +   DAP TWFRET+V+P   K
Sbjct: 31  SIYPRFRYYAHKAFDAPATWFRETIVQPLNNK 62


>AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32b protein.
          Length = 216

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 460 GAYGDARKAYMKHKHPMVWERPNGP 534
           GAYGD    Y   +   +W++P GP
Sbjct: 75  GAYGDVGSVYGIAQQKRIWQKPRGP 99


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 460 GAYGDARKAYMKHKHPMVWERPNGP 534
           GAYGD    Y   +   +W++P GP
Sbjct: 243 GAYGDVGSVYGIAQQKRIWQKPRGP 267


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 90  FRRCTILKLRYRCLNFIKCYLS 25
           FRR  + K++YRCL   KC +S
Sbjct: 65  FRRAVVNKMQYRCLREQKCLIS 86


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 90  FRRCTILKLRYRCLNFIKCYLSSRP 16
           FRR TI KL+YRC     CY +  P
Sbjct: 75  FRRVTIEKLKYRCSAGNACYTNFGP 99


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 205 LAYHQNYRRVPTIDQCYDDDVVCDFEA----NAQFKRDRAVXSEILSILRQRYEDCMMYE 372
           +AY+  + RV  + + YDD ++    A    N     D  V  EI  I  Q++ED     
Sbjct: 189 VAYYDGFVRVGVVHEQYDDMLLVKRVAVNRNNLSVLLD-VVFEEIGRI--QKFEDTEKQR 245

Query: 373 QPDHATKCRSLWDKYKSAEE 432
           + D  T  +SL DK  + EE
Sbjct: 246 REDMLTTSKSLSDKLVAEEE 265


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 205 LAYHQNYRRVPTIDQCYDDDVVCDFEA----NAQFKRDRAVXSEILSILRQRYEDCMMYE 372
           +AY+  + RV  + + YDD ++    A    N     D  V  EI  I  Q++ED     
Sbjct: 189 VAYYDGFVRVGVVHEQYDDMLLVKRVAVNRNNLSVLLD-VVFEEIGRI--QKFEDTEKQR 245

Query: 373 QPDHATKCRSLWDKYKSAEE 432
           + D  T  +SL DK  + EE
Sbjct: 246 REDMLTTSKSLSDKLVAEEE 265


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 166  SEKLLSNQTRRSTLAYHQNYRRVPTIDQCYDDD 264
            + K+L++Q ++  L  H+  +R PTI    D+D
Sbjct: 4177 ARKILADQNQKKQLIMHEEKKRTPTILTIGDED 4209


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 304 DRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 453
           D A    + S+ + + E   M+E     T C  L DKY    + WF ++G
Sbjct: 273 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 321


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 304 DRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYG 453
           D A    + S+ + + E   M+E     T C  L DKY    + WF ++G
Sbjct: 480 DLAFPKLLESVSQNKLETIDMFEAVAECTYC-CLLDKYLELVQVWFPQFG 528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,108
Number of Sequences: 27780
Number of extensions: 268481
Number of successful extensions: 671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)