Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P24
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related ...    31   0.64 
At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related ...    30   1.1  
At2g15800.1 68415.m01811 expressed protein  and genefinder             29   2.0  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   6.0  
At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1...    28   6.0  

>At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related
           similar to NADH-ubiquinone oxidoreductase 12 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-12KD) (CI-12KD).
           (Swiss-Prot:Q03015) [Neurospora crassa]
          Length = 107

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 262 DVVCDFEANAQFKRDRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSA 426
           D V   E      R++ +  E   ILR++ + C   E  +H  KCR L  +Y  A
Sbjct: 26  DPVAMVEMREHIVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDA 80


>At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related
           similar to NADH-ubiquinone oxidoreductase 12 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-12KD) (CI-12KD).
           (Swiss-Prot:Q03015) [Neurospora crassa]
          Length = 106

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 262 DVVCDFEANAQFKRDRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLWDKY 417
           D V   E      R++ +  E   ILR++ + C   E  +H  KCR L  +Y
Sbjct: 26  DPVAMVEMREHIVREKWIQIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQY 77


>At2g15800.1 68415.m01811 expressed protein  and genefinder
          Length = 231

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/86 (26%), Positives = 32/86 (37%)
 Frame = +1

Query: 259 DDVVCDFEANAQFKRDRAVXSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAW 438
           DDVV D  A           +E +    +    C   E+PDHA      WD Y  AE + 
Sbjct: 150 DDVVDDAAAEDINTVPEETVAEEVEDEDEFERQCYDVERPDHAMDTDDEWDAYDQAERS- 208

Query: 439 FIKYGDLGAYGDARKAYMKHKHPMVW 516
                       +R+ + K K P +W
Sbjct: 209 -----------SSRQKFSKDKPPYIW 223


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  NDGNPPDDNVFRAFCNALYNTVDAPVTWFRETV 179
           N G+  +D  +      +YNT+D P  +FR T+
Sbjct: 205 NHGHVENDESWHPMSEKIYNTLDKPTRFFRFTL 237


>At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1.1)
           (GLR1) identical to putative glutamate receptor (GLR1)
           GB:AF079998 [Arabidopsis thaliana]; plant glutamate
           receptor family, PMID:11379626
          Length = 808

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 383 MQLNAGLF--GTSTSLLRKLGSLNMVTSVLMVMRE 481
           MQLN  +   G++TS+  KLGS+N V +   ++R+
Sbjct: 632 MQLNHQMVFGGSTTSMTAKLGSINAVEAYAQLLRD 666


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,640
Number of Sequences: 28952
Number of extensions: 241177
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)