Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P20
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    29   0.44 
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    26   5.4  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIP 396
           +L + +A ++G LLGD FL L+P
Sbjct: 165 MLNLFVAVSAGSLLGDVFLQLLP 187


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 391 LNAGTHRRGVHQTRKLG 341
           +N  +H RG+ +TRKLG
Sbjct: 247 MNCNSHLRGIKRTRKLG 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,343
Number of Sequences: 5004
Number of extensions: 48888
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)