Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P20
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         70   1e-12
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)                     34   0.087
SB_48187| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1)            31   0.62 
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                29   2.5  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   5.7  
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48621| Best HMM Match : SFT2 (HMM E-Value=6.6)                      28   7.6  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)                  28   7.6  

>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
 Frame = +1

Query: 124 YAHSHSHSDESPAFKYSKHANEQKEHDKIYEP-----------XYNLYVSALCSTXXXXX 270
           + HSH H  +   + +    +   +H+++ +               +++ AL ST     
Sbjct: 366 HGHSHEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKVRSTSTVWLEALGSTLLISA 425

Query: 271 XXXXXXXXXXXXGTIEKQ-PLLKILLAFASGGLLGDAFLHLIPHALMPHNDKQGXXXXXX 447
                       G  E+Q PLL+ILLAFASGGLLGDAFLHLIPHA+ PH+   G      
Sbjct: 426 APFFILFFIPLEGNSEEQQPLLRILLAFASGGLLGDAFLHLIPHAINPHS-HGGEDDHGH 484

Query: 448 XXXGTQEHGPHD 483
                  HG HD
Sbjct: 485 SHDHGHSHGSHD 496



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 124 YAHSHSHSDESPAFKYSKHANEQKEHDKIYE 216
           + HSH HS E+    +  H +  + H   +E
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE 339


>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 331 LKILLAFASGGLLGDAFLHLIPHA 402
           L++LL+FA GGLLGD FLHL+P A
Sbjct: 101 LRLLLSFAVGGLLGDVFLHLLPEA 124


>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
          Length = 656

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIPHALMPHNDKQ 426
           +L +L++ A G L GD  LHLIPHA   H  ++
Sbjct: 389 VLALLVSLAVGTLAGDGVLHLIPHAFGLHKHEE 421


>SB_48187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIPH 399
           ++  L+A A G L GDA LHLIPH
Sbjct: 34  IMSFLVALAIGTLSGDALLHLIPH 57


>SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1)
          Length = 306

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 475 DHVLGFRENGNDCDYALVCRCEA*VHEV 392
           ++V+  R   N C YA+VCR    VHEV
Sbjct: 60  EYVVRLRHLANSCHYAVVCRSNKQVHEV 87


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +3

Query: 336  NTPSFRVWWTPRRCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWN 515
            N  SF V W P       N   +++    T A  +SFP   NP    T  N  S+   WN
Sbjct: 1152 NRESFPVQWNPINTDTIANRE-SYSINTDTIANRESFPVQWNPLNTDTIGNRESFPVQWN 1210


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 569 P*PPLKSLTVFSTTKNVIIPPSTPRPTVMSCGPCSWVP 456
           P PP+    +   T N  IPP++P P++    P   +P
Sbjct: 243 PNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIP 280


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 97  ALIVTFTIVYAHSHSHS 147
           +L+ TFTI+  HSHSH+
Sbjct: 322 SLLFTFTIIRTHSHSHA 338


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 100 LIVTFTIVYAHSHSHSDESPA 162
           +IV+ TI++ H H HS  SP+
Sbjct: 594 IIVSITILHCHHHRHSPSSPS 614



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 97  ALIVTFTIVYAHSHSHSDESPA 162
           + IV+ TI++ H H HS  SP+
Sbjct: 499 SFIVSITILHCHHHRHSPSSPS 520


>SB_48621| Best HMM Match : SFT2 (HMM E-Value=6.6)
          Length = 97

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 87  SIFCFNCDIYYSLCTFTFA 143
           +IFCFNC ++Y   T+ F+
Sbjct: 58  TIFCFNCVLFYIQATYWFS 76


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 87  SIFCFNCDIYYSLCTFTFA 143
           +IFCFNC ++Y   T+ F+
Sbjct: 731 TIFCFNCVLFYIQATYWFS 749


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 87   SIFCFNCDIYYSLCTFTFA 143
            +IFCFNC ++Y   T+ F+
Sbjct: 1353 TIFCFNCVLFYIQATYWFS 1371


>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
          Length = 384

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 518 IIPPSTPRPTVMSCGPCSWVP*EWE*L*LCPCL-SL*GMSA*GIKCRN 378
           I PPST    V+ CGP  W   EW    +C  +    G S   ++CRN
Sbjct: 306 IKPPSTKTCNVVDCGP-GWEKGEWS---VCAGVPGQQGTSTRSVECRN 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,205
Number of Sequences: 59808
Number of extensions: 381540
Number of successful extensions: 1122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)