BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P20 (652 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 64 1e-10 Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical pr... 56 3e-08 Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical pr... 36 0.033 AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 28 6.6 AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 8.7 AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 8.7 >Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical protein H13N06.5 protein. Length = 462 Score = 63.7 bits (148), Expect = 1e-10 Identities = 49/150 (32%), Positives = 62/150 (41%), Gaps = 9/150 (6%) Frame = +1 Query: 130 HSHSHSDE--SPAFKYSKHANEQKEHDK----IYEPXYNLYVSALCSTXXXXXXXXXXXX 291 H HSH D S + +K ++ ++ + + L+V A+ +T Sbjct: 118 HGHSHEDHGHSHGAESAKQVGDEYQYTGFLSFLNDAKTRLWVYAISATLLISAAPCFILM 177 Query: 292 XXXXXG-TIEKQPLLKILLAFASGGLLGDAFLHLIPHALMPHNDKQG--XXXXXXXXXGT 462 T E PLLK+LLAF SGGLLGDAFLHLIPHA P D G G Sbjct: 178 FIPIQANTSESGPLLKVLLAFGSGGLLGDAFLHLIPHA-TPAGDGHGHSHSHGHSHGGGG 236 Query: 463 QEHGPHDXXXXXXXXXXXXXXXXXEKTVRL 552 HG HD EK VR+ Sbjct: 237 HSHGAHDMSVGGWVLGGIIAFLTVEKLVRI 266 >Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical protein T28F3.3 protein. Length = 393 Score = 55.6 bits (128), Expect = 3e-08 Identities = 23/31 (74%), Positives = 27/31 (87%) Frame = +1 Query: 325 PLLKILLAFASGGLLGDAFLHLIPHALMPHN 417 P LKILLAF +GGLLGDA LH+IPH+L PH+ Sbjct: 113 PFLKILLAFGAGGLLGDALLHIIPHSLSPHD 143 >Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical protein C14H10.1 protein. Length = 353 Score = 35.5 bits (78), Expect = 0.033 Identities = 16/27 (59%), Positives = 18/27 (66%) Frame = +1 Query: 322 QPLLKILLAFASGGLLGDAFLHLIPHA 402 Q L +LL FA G LL D FLHL+P A Sbjct: 144 QRRLNLLLGFAIGSLLADVFLHLLPEA 170 >AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in blocked unfolded proteinresponse protein 6 protein. Length = 388 Score = 27.9 bits (59), Expect = 6.6 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 372 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 548 +C PA NT C+ Q+ +A Q + + N T + +N + +T N +C CQ Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTSQN---ANCAPACQ 273 >AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in blocked unfolded proteinresponse protein 7 protein. Length = 438 Score = 27.5 bits (58), Expect = 8.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 372 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 548 +C PA NT C+ Q+ +A Q + + N T + +N + +T N +C CQ Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTNQN---ANCAPACQ 273 >AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 5 protein. Length = 388 Score = 27.5 bits (58), Expect = 8.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 372 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 548 +C PA NT C+ Q+ +A Q + + N T + +N + +T N +C CQ Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTNQN---ANCAPACQ 273 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,521,426 Number of Sequences: 27780 Number of extensions: 284191 Number of successful extensions: 763 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 763 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1444744186 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -