Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P20
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat...    34   0.094
At1g14205.1 68414.m01681 ribosomal protein L18 family protein si...    28   6.2  
At5g45105.1 68418.m05535 metal transporter, putative (ZIP8) simi...    27   8.2  
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    27   8.2  
At5g09400.1 68418.m01089 potassium transporter family protein si...    27   8.2  
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden...    27   8.2  
At4g19690.1 68417.m02891 iron-responsive transporter (IRT1) iden...    27   8.2  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    27   8.2  

>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
           similar to IAA-alanine resistance protein 1 [Arabidopsis
           thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
           transporter domain, Pfam:PF02535; identical to cDNA
           IAA-alanine resistance protein 1 mRNA GI:6942042
          Length = 469

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 340 LLAFASGGLLGDAFLHLIPHA 402
           L  F +G +LGDAFLH +PHA
Sbjct: 146 LALFGAGAMLGDAFLHQLPHA 166


>At1g14205.1 68414.m01681 ribosomal protein L18 family protein
           similar to SP|P09415 50S ribosomal protein L18 {Bacillus
           stearothermophilus}
          Length = 233

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 TXLQLIRQCFVFYIVYKYSAILYTFL 293
           T + LIR CFV Y VY    I++  L
Sbjct: 113 TVIHLIRVCFVGYAVYSIGGIVFASL 138


>At5g45105.1 68418.m05535 metal transporter, putative (ZIP8) similar
           to putative metal transporter ZIP8 [Arabidopsis
           thaliana] gi|18997103|gb|AAL83293; similar to
           iron-regulated transporter 1 [Lycopersicon esculentum]
           gi|9716481|gb|AAF97509; member to the Zinc (Zn2+)-Iron
           (Fe2+) Permease (ZIP) family, PMID:11500563
          Length = 315

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIP 396
           +  I+  FASG +LG  F+H++P
Sbjct: 84  IFMIIKCFASGIILGTGFMHVLP 106


>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 132 MCINYSKCHN*SKICYTTPLQTFSQFHKFKTNHFQTTH 19
           + I YS   + S + + +PLQTFS+ H +     Q  H
Sbjct: 96  LLIVYSTSPSASALQWLSPLQTFSKLHPYVYTQCQAIH 133


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 321 LFNC-TXYGYKEKYKEWHYTYKQCRTQSTD 235
           LF C   YGYK+  KE H  ++Q   +S +
Sbjct: 670 LFRCIARYGYKDARKETHQAFEQLLIESLE 699


>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIP 396
           +  I+  FASG +LG  F+H++P
Sbjct: 77  IFTIIKCFASGIILGTGFMHVLP 99


>At4g19690.1 68417.m02891 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 211

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 328 LLKILLAFASGGLLGDAFLHLIP 396
           +  I+  FASG +LG  F+H++P
Sbjct: 85  IFTIIKCFASGIILGTGFMHVLP 107


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 569 P*PPLKSLTVFSTTKNVIIPPSTPRPTVMSCGP 471
           P PP  + +V S T  V  PP TP P+V S  P
Sbjct: 99  PPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP 131



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 569 P*PPLKSLTVFSTTKNVIIPPSTPRPTVMSCGP 471
           P PP  + +V S T  V  PP TP P+V S  P
Sbjct: 117 PPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP 149



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 569 P*PPLKSLTVFSTTKNVIIPPSTPRPTVMSCGP 471
           P PP  + +V S T  V  PP TP P+V S  P
Sbjct: 135 PPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,356
Number of Sequences: 28952
Number of extensions: 250270
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)