BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P18 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.19 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.25 SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 1.8 SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 2.3 SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 3.1 SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 5.4 SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 7.2 SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 7.2 SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.2 SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 7.2 SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 9.5 >SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual Length = 358 Score = 30.7 bits (66), Expect = 0.19 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Frame = -1 Query: 385 LXSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 227 L ++CP T GP PG T +PT ++ Y S+++S I +ST+ + Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94 Query: 226 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 65 S V S + + T+ T S T SS+ S T P +S+++ + Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 30.3 bits (65), Expect = 0.25 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +1 Query: 499 SWILTVPSLXTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST 645 SW T P TS S+V S +++ T TFT S S+ S+ +T Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTAT 666 >SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit Rpn3|Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 27.5 bits (58), Expect = 1.8 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -1 Query: 298 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 119 V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199 Query: 118 SSLR 107 +SLR Sbjct: 200 ASLR 203 >SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 27.1 bits (57), Expect = 2.3 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = -3 Query: 305 RDGESRVYPAVR-VHNGERDFINDAVN 228 ++G+ ++P+V+ +H GER+ IND V+ Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46 >SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/47 (25%), Positives = 22/47 (46%) Frame = +3 Query: 459 LWKTWEGGRIKMLVLDLNCPIVEXECKSGRKKLLVDYFHTNLHTQNF 599 +W G +K LV +N P+ + RK LLV ++ + ++ Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDY 252 >SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr 3|||Manual Length = 1374 Score = 25.8 bits (54), Expect = 5.4 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 504 DLNCPIVEXECKSGRKKLLVDYFHTNLHTQNFYAFRFF 617 D V E KS K LL +T LH +Y F FF Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310 >SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +2 Query: 11 PDTRT*RTSVLTTATDAPRARHV*RFR--LRKGASQARLCVH 130 PD +T T +L P RH+ RF+ ++ + RLC++ Sbjct: 125 PDAKTNWTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMY 166 >SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 25.4 bits (53), Expect = 7.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 275 VRVHNGERDFINDAVNRVTDVL 210 V NG R+++ DAV R DV+ Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520 >SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = +3 Query: 405 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 500 WV L+F+AI+ VP L+ T +GG++++ V Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85 >SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 594 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +2 Query: 422 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 508 I S NP L S N+ RR D GP S Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392 >SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 25.0 bits (52), Expect = 9.5 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +3 Query: 531 ECKSGRKKLLVDYFHTNLH 587 E +SG+ + L+D+F TN H Sbjct: 151 EFRSGKPQTLMDFFRTNNH 169 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,698,998 Number of Sequences: 5004 Number of extensions: 55080 Number of successful extensions: 177 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 177 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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