Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_P18
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.19
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.25
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 1.8
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 2.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 3.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 5.4
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 7.2
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 7.2
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 9.5
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.19
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -1
Query: 385 LXSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 227
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 226 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 65
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 499 SWILTVPSLXTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST 645
SW T P TS S+V S +++ T TFT S S+ S+ +T
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTAT 666
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -1
Query: 298 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 119
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 118 SSLR 107
+SLR
Sbjct: 200 ASLR 203
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -3
Query: 305 RDGESRVYPAVR-VHNGERDFINDAVN 228
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 459 LWKTWEGGRIKMLVLDLNCPIVEXECKSGRKKLLVDYFHTNLHTQNF 599
+W G +K LV +N P+ + RK LLV ++ + ++
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDY 252
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 504 DLNCPIVEXECKSGRKKLLVDYFHTNLHTQNFYAFRFF 617
D V E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 11 PDTRT*RTSVLTTATDAPRARHV*RFR--LRKGASQARLCVH 130
PD +T T +L P RH+ RF+ ++ + RLC++
Sbjct: 125 PDAKTNWTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMY 166
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 275 VRVHNGERDFINDAVNRVTDVL 210
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 405 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 500
WV L+F+AI+ VP L+ T +GG++++ V
Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 422 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 508
I S NP L S N+ RR D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 531 ECKSGRKKLLVDYFHTNLH 587
E +SG+ + L+D+F TN H
Sbjct: 151 EFRSGKPQTLMDFFRTNNH 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,998
Number of Sequences: 5004
Number of extensions: 55080
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -