Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P18
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   3.2  
09_06_0216 + 21627238-21627834                                         28   5.6  
12_02_1279 + 27510605-27513301                                         28   7.4  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   7.4  
07_03_1506 - 27161056-27161454                                         27   9.8  
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60...    27   9.8  
03_05_0865 - 28365430-28367640                                         27   9.8  
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890     27   9.8  

>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +1

Query: 397 IISGFVLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLXTSASRVVKSYLSTIST 576
           ++  F +C  +K   F      G+    +A+R      +  S+ +S +    S++STI+T
Sbjct: 232 VLMSFGICIIWKYKGFEKSRGTGRVSNSSATRKTGMRSSFSSMTSSTA----SFVSTIAT 287

Query: 577 RTCTLKTFTLSD 612
              T+KTF++S+
Sbjct: 288 CPPTVKTFSISE 299


>09_06_0216 + 21627238-21627834
          Length = 198

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 508 LTVPSLXTSASRVVKSYLSTISTRTCTLKT 597
           LTVPS+ T  +  V SY++T +T T T  T
Sbjct: 160 LTVPSVDTYNTSTVTSYVATDNTSTITSST 189


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 250 SRSPLWTRTAGYTLLSPSRTDLSA 321
           SR+P+WT TAG T+L      L+A
Sbjct: 91  SRTPVWTATAGTTILQSIVLSLTA 114


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 265  WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTXLNITNIISGFVLCYSFKQSCF 444
            W+    Y L    + +L A  +RI       HM +    LN+T  I        FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265

Query: 445  MFP 453
            + P
Sbjct: 1266 LPP 1268


>07_03_1506 - 27161056-27161454
          Length = 132

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 311 SVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERD 180
           +VRD E    P V   NG  D +++   +  +V  RR+E R  D
Sbjct: 49  AVRDDEDDGAPTVGGRNGGADEVDEDAAKPMEVTPRREEVRGDD 92


>05_01_0091 +
           602481-602721,602819-602901,603431-603560,604188-604267,
           604353-604442,605019-605143,605702-605762,605839-605889,
           605976-606053,606136-606241,606333-606478,607054-607176
          Length = 437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 136 LSMHTESSLRSPFTEPKTSNMAGARRVGRGREYG 35
           LS++  S  R+P T   +SN+ G   V R +E G
Sbjct: 46  LSLYASSLPRAPTTPSSSSNLVGLTLVRRAKEKG 79


>03_05_0865 - 28365430-28367640
          Length = 736

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 326 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 174
           D++    RD   R     R  + +RD   D   R  D  SRRD  R+RD+D
Sbjct: 62  DSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDD-SRRDRDRDRDRD 111


>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
          Length = 595

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 374 LSFDMWA-DAGLHVILSDAADKSVRDGESRV 285
           LSFD W  D  LH+++    D   R+  SRV
Sbjct: 15  LSFDDWVPDEALHLVMGHVEDPRDREAASRV 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,496
Number of Sequences: 37544
Number of extensions: 380232
Number of successful extensions: 1142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)