Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P18
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                33   0.27 
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              30   1.9  
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)             29   3.3  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 28   7.6  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   28   7.6  

>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -3

Query: 365 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 192
           D W  A       +  D  +  G      A R    GE D  IND  N++ +++S R+  
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553

Query: 191 RERDQDNHGGFV 156
           +     NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 195 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 374
           ++T  Q + DP + I+D+     + T   I  T     +++   G+D +     P  +  
Sbjct: 95  IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154

Query: 375 DEXKY-HKYYQWVCFVLFFQAILFY 446
           D+  +    Y  +CFV  F  ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 39  YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYI 218
           ++ P PT R+P    +  S+ GL+ + +   +    R ++  T     A++L +  ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707

Query: 219 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 320
           G  +D I      LAV  +   + + FTI   ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742


>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
          Length = 327

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 391 TNIISGFVLCYSFKQSCFMFPATCG-KRGKEAASRCWSWILTVPSLXTSASRVVKSYLST 567
           T ++  ++ C  FK    M  +       K   +   S++  VPS   +A  +VKSYL+ 
Sbjct: 15  TAMVKSYLNCVPFKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTA--MVKSYLNC 72

Query: 568 ISTRTCT 588
           + ++TCT
Sbjct: 73  VPSKTCT 79


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 310 DLSAASERITCNPASAHMSKDKTXLNITNIISGFVLCYSFK 432
           ++S    ++  +  +A  S+D+  L ITNIIS F+L  SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 168 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 293
           V+I+   +LL+T  Q    P++     + +A++DT  ++  T
Sbjct: 4   VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 489 KMLVLDLNCPIVEXECKSGRKKLLVD 566
           K+ VL+LNC  +  + KSG  K LVD
Sbjct: 220 KLKVLNLNCNSIRSQHKSGLFKALVD 245


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 489 KMLVLDLNCPIVEXECKSGRKKLLVD 566
           K+ VL+LNC  +  + KSG  K LVD
Sbjct: 219 KLKVLNLNCNSIRSQHKSGLFKALVD 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,073,921
Number of Sequences: 59808
Number of extensions: 452949
Number of successful extensions: 1252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)