BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P17 (653 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc... 85 6e-18 SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 31 0.19 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.5 >SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Schizosaccharomyces pombe|chr 1|||Manual Length = 64 Score = 85.4 bits (202), Expect = 6e-18 Identities = 38/60 (63%), Positives = 46/60 (76%) Frame = +1 Query: 115 MYLRYYLNDKGDREYTLXTIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 294 M+L YYLND+G R YTL + P G+ T S+HPARFSP+DKYSR R +KKRF +LLTQ P Sbjct: 1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60 >SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy |Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 30.7 bits (66), Expect = 0.19 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -3 Query: 381 LKRIVKMYQNLDHFGNFQYKSIFILMNRFRLLCKQQAKSLLD 256 LKR+ QNL H Q+KS F+ +++ L QQ + L+D Sbjct: 314 LKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLID 355 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.0 bits (52), Expect = 9.5 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +3 Query: 495 NPRLPHWYIGPLQVFSI*PCSLTSFQVMVAVLISLSTVCR 614 NP+ P++Y+G +F + C+L S + + CR Sbjct: 937 NPK-PYFYLGIYTLFGLLSCALISLSSLTITVFCAIKSCR 975 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,494,516 Number of Sequences: 5004 Number of extensions: 49271 Number of successful extensions: 81 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 81 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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