Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P17
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family pro...    81   5e-16
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)...    27   8.2  

>At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family
           protein similar to Nop10p (GI:8096260) [Homo sapiens]
          Length = 64

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 35/58 (60%), Positives = 45/58 (77%)
 Frame = +1

Query: 115 MYLRYYLNDKGDREYTLXTIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQ 288
           MYL+ Y+N+KG++ YT     P G  T SAHPARFSP+DKYS+ R+++KKRFGLL TQ
Sbjct: 1   MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQ 58


>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
           nearly identical to ubiquitin-conjugating enzyme UBC19
           [Arabidopsis thaliana] GI:22530865; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 181

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 275 CCLHNNLNLFIKINIDLY*KLPKWSKF*YILTILFKI 385
           CC H N++L+  I +D+     KWS    + TIL  I
Sbjct: 107 CCFHPNVDLYGNICLDIL--QDKWSSAYDVRTILLSI 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,070
Number of Sequences: 28952
Number of extensions: 243569
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)