Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P13
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    90   2e-19
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    52   7e-08
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.4  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   4.1  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.5  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   5.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.5  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   5.5  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
 Frame = +3

Query: 126 IKVGDQLPAADLFEDSPASKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 305
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 306 KSDGVAEIVCVSVNDPYVMAAWGAXHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGG 476
            + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 477 FRSKRFSMVIVDSXVQDLNVEPDGTGLSCSLADXI 581
            RSKR++ V+ +  V  + +E + T +  S AD +
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 34/106 (32%), Positives = 55/106 (51%)
 Frame = +3

Query: 126 IKVGDQLPAADLFEDSPASKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 305
           I+VGD +P   L  D   + + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 306 KSDGVAEIVCVSVNDPYVMAAWGAXHNTKGKVRMLADPSGNFIKAL 443
           ++    E++ +S +      A+    N      +L+DP G  IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 332 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 243
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 180 SKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 350
           +K  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  YPWHYRIHQSSVSASTSHFTIKHGTN 127
           +P   + H +S+S+   HF+++H  N
Sbjct: 653 FPQALKAHMNSISSPKRHFSLRHKKN 678


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 34  HRALRLSVALPHSPIERQREHFTFHN*AWHQLRSGISCLL 153
           H  L  +V  PH P+ ++ +HFT+   A      G+  ++
Sbjct: 13  HELLDWNVKAPHVPLSQRLKHFTWSWFACTMATGGVGLII 52


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 320 NSIRFQFICVLYVSRQVCFRTSRG 249
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 23  LMFLTGLFDYPWHYRIHQSSVSASTSHFT 109
           LM L   +D   H   H  S+SAS SH T
Sbjct: 384 LMILCLYYDLHMHLLAHPISLSASQSHLT 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,900
Number of Sequences: 5004
Number of extensions: 53888
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)