Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P13
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)         109   1e-24
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   3e-16
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   1.9  
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)                       29   4.4  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           28   7.6  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score =  109 bits (263), Expect = 1e-24
 Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 4/175 (2%)
 Frame = +3

Query: 117 MAPIKVGDQLPAA--DLFEDSPASKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 290
           M P + G ++P     + E +   KV+   L AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 291 NADKLKSDGVAEIVCVSVNDPYVMAAWGAXHNTKGKVRMLADPSGNFIKALDLGTNLPPL 470
            A   K+ GV +I+C+SVND +VM +W A    +  +  + D +G F + + +  +   L
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMGMLVDKSDL 119

Query: 471 G-GFRSKRFSMVIVDSXVQDLNVEPDGTGLSCSLADX-IKVKYAXCNIALQN*IT 629
           G G RS R+SM++ D  ++ + +EPD  G    ++D    + Y   N  L   +T
Sbjct: 120 GFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSDADTMLNYINPNAQLPKRVT 174


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +3

Query: 303 LKSDGVAEIVCVSVNDPYVMAAWGAXHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 479
           +KS GV  + C++VNDP+VM+AWG  +  +GK             A+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK-------------AVDLELDATPFLGNI 99

Query: 480 RSKRFSMVIVDSXVQDLNVEPDGTGLSCSLADXI 581
           RSKR++M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 243 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 347
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
          Length = 178

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 309 ISVYLRSVRIPASVF*NIPG*RRPAPQII 223
           +SVY  S  +P +VF  +PG R P P ++
Sbjct: 24  LSVYKASELLPRTVFIRVPGGRCPCPHLL 52


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 544 SGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKL 425
           SG  + + T+++  T+EN++   PP G   V R R + +L
Sbjct: 3   SGCGYETTTMITNWTVENVIPLPPPEGH--VEREREIYEL 40


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 352 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 227
           GSL +  TI+++  +F+++A   +PG   +    V  P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 432 IKALDLGTNLPPLGGFRSKRFSMVIVDSXVQDL 530
           ++A+DL TN+  +G  R+  F +  VD  V+D+
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 386 VVXSSPSRHHIRVINRHAHYFSNSIRFQFICVLYVSRQV 270
           VV   P   HI  +  H H+     R QF  +LYV   +
Sbjct: 621 VVQLEPKFDHITPVLTHLHWLPVEFRIQFKILLYVHHSI 659


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 27  CFSQGSSIIRGITAFTNRAS-ARA 95
           C +Q S +I G+T FTNRA  ARA
Sbjct: 373 CTTQASRVIVGLTQFTNRAHIARA 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,164
Number of Sequences: 59808
Number of extensions: 452739
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)