BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P11 (651 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 24 0.94 EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 24 0.94 AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 22 5.0 AY052394-1|AAL15468.1| 228|Tribolium castaneum tryptophan oxyge... 21 6.7 AY052392-1|AAL15466.1| 388|Tribolium castaneum tryptophan oxyge... 21 6.7 AY052390-1|AAL15464.1| 388|Tribolium castaneum tryptophan oxyge... 21 6.7 AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 6.7 AM295016-1|CAL25731.1| 96|Tribolium castaneum ecdysone recepto... 21 6.7 AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 21 6.7 >EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase 2B protein. Length = 528 Score = 24.2 bits (50), Expect = 0.94 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 242 KENGTDEAPEDSPAENGDAEESNDASXNGDATE 340 +E G DEA D EN A+E + GD + Sbjct: 21 EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53 >EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase 2A protein. Length = 535 Score = 24.2 bits (50), Expect = 0.94 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 242 KENGTDEAPEDSPAENGDAEESNDASXNGDATE 340 +E G DEA D EN A+E + GD + Sbjct: 21 EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53 >AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. Length = 556 Score = 21.8 bits (44), Expect = 5.0 Identities = 6/13 (46%), Positives = 10/13 (76%) Frame = -3 Query: 556 CRSGICGCELNSN 518 C+ G+C E+NS+ Sbjct: 140 CKKGVCTMEINSD 152 >AY052394-1|AAL15468.1| 228|Tribolium castaneum tryptophan oxygenase protein. Length = 228 Score = 21.4 bits (43), Expect = 6.7 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = -2 Query: 395 LLFXHQEPQISSSHQXLSFL 336 + F EP+ S HQ L+ L Sbjct: 116 ITFYRDEPRFSQPHQILTLL 135 >AY052392-1|AAL15466.1| 388|Tribolium castaneum tryptophan oxygenase protein. Length = 388 Score = 21.4 bits (43), Expect = 6.7 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = -2 Query: 395 LLFXHQEPQISSSHQXLSFL 336 + F EP+ S HQ L+ L Sbjct: 276 ITFYRDEPRFSQPHQILTLL 295 >AY052390-1|AAL15464.1| 388|Tribolium castaneum tryptophan oxygenase protein. Length = 388 Score = 21.4 bits (43), Expect = 6.7 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = -2 Query: 395 LLFXHQEPQISSSHQXLSFL 336 + F EP+ S HQ L+ L Sbjct: 276 ITFYRDEPRFSQPHQILTLL 295 >AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain transcription factor Prothoraxlessprotein. Length = 323 Score = 21.4 bits (43), Expect = 6.7 Identities = 9/37 (24%), Positives = 16/37 (43%) Frame = -2 Query: 374 PQISSSHQXLSFLWHHRXQMHRCFLRHHHFQQANLLG 264 P +++ + HH + H + HH QQ + G Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 191 >AM295016-1|CAL25731.1| 96|Tribolium castaneum ecdysone receptor (isoform B) protein. Length = 96 Score = 21.4 bits (43), Expect = 6.7 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +2 Query: 149 VAPEEVTSTEPKESPVKKSPAKKVEAAE 232 VAPEE +S S + SPA + + + Sbjct: 9 VAPEESSSEVTSSSALVMSPANSLASTD 36 >AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless protein. Length = 325 Score = 21.4 bits (43), Expect = 6.7 Identities = 9/37 (24%), Positives = 16/37 (43%) Frame = -2 Query: 374 PQISSSHQXLSFLWHHRXQMHRCFLRHHHFQQANLLG 264 P +++ + HH + H + HH QQ + G Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 193 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 119,406 Number of Sequences: 336 Number of extensions: 2209 Number of successful extensions: 9 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 122,585 effective HSP length: 55 effective length of database: 104,105 effective search space used: 16760905 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -