Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P11
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   0.94 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   0.94 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.0  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   6.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.7  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 242 KENGTDEAPEDSPAENGDAEESNDASXNGDATE 340
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 242 KENGTDEAPEDSPAENGDAEESNDASXNGDATE 340
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 556 CRSGICGCELNSN 518
           C+ G+C  E+NS+
Sbjct: 140 CKKGVCTMEINSD 152


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 395 LLFXHQEPQISSSHQXLSFL 336
           + F   EP+ S  HQ L+ L
Sbjct: 116 ITFYRDEPRFSQPHQILTLL 135


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 395 LLFXHQEPQISSSHQXLSFL 336
           + F   EP+ S  HQ L+ L
Sbjct: 276 ITFYRDEPRFSQPHQILTLL 295


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 395 LLFXHQEPQISSSHQXLSFL 336
           + F   EP+ S  HQ L+ L
Sbjct: 276 ITFYRDEPRFSQPHQILTLL 295


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -2

Query: 374 PQISSSHQXLSFLWHHRXQMHRCFLRHHHFQQANLLG 264
           P +++       + HH  + H    + HH QQ  + G
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 191


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 149 VAPEEVTSTEPKESPVKKSPAKKVEAAE 232
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -2

Query: 374 PQISSSHQXLSFLWHHRXQMHRCFLRHHHFQQANLLG 264
           P +++       + HH  + H    + HH QQ  + G
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYG 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,406
Number of Sequences: 336
Number of extensions: 2209
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)