Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_P11
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.027
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.062
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.11
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.25
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.33
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.33
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.44
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.58
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.58
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.3
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 3.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 4.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 4.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 5.4
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 26 5.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 5.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 7.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 7.2
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 7.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 9.5
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 9.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.5
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 9.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 113 ATMADAAVDKKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAPEDSPAE 286
++ D + K + + +S EP + VK K KK E++ + E+ + E+ S
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 287 NGDAEESNDASXNGDATEKK 346
+ ES +S ++E +
Sbjct: 104 ESSSSESESSSSESSSSESE 123
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 137 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 313
+KKE + + + + ES + S ++ E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 314 ASXNGDA 334
+S +GD+
Sbjct: 215 SSESGDS 221
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 122 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 301
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 302 E 304
E
Sbjct: 236 E 236
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.062
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 140 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 304
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 155 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 307
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 188 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDA 334
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 182 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDATEKKXTGV 358
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 359 KRK 367
+K
Sbjct: 182 DKK 184
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 143 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 319
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 320 XNGDAT 337
AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 221 EAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGD 331
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/60 (21%), Positives = 34/60 (56%)
Frame = +2
Query: 158 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDAT 337
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +S + D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +2
Query: 167 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDATEKK 346
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +2
Query: 167 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDATEKK 346
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.58
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASXNGD 331
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 146 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 304
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 164 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDATEK 343
V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ D +E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 200 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDATEKKXTGVKR 364
K P+ K + S+ +NG+D DS + N SN + N +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 164 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 313
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDED 218
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 170 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESN 310
S P++SPV+ V+ +ESN K +GT+ + +P NG+ E +N
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVNN 225
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 606 RAQPFIV*GYQYGCNTFVGAXYVDVS*TLMGIDALQ 499
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 161 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNG 328
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 149 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 310
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 128 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 295
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 296 AEESN 310
E+ +
Sbjct: 135 EEDGS 139
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 218 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGDA 334
VE + NG + + ++ +DS ++ + ESND S + DA
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDA 409
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 164 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDA 316
+ ++ K SPV + A +N + + +SP + EE+N A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQA 577
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +2
Query: 152 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASXNGD 331
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 332 ATEKKXTGVKRKS 370
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 634 YKXNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 533
Y +LN+ + L +R + ++ SGICGC
Sbjct: 109 YALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 131 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 274
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 182 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 310
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 367 FPLHTSXFLFCGITVXRCIVAFFGITIFS 281
FP+ F FC IV+ G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 313
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 176 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 289
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 125 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 283
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 316 CIVAFF-GITIFSRRIFWGFIGTILFA 239
C+ FF G TI+ +F G +GT L A
Sbjct: 368 CMRNFFPGFTIYFPALFLGVVGTFLIA 394
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 113 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGK 244
A A A + + +V+ + + +PK++PV S A + S+ K
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQASENASDKK 253
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +2
Query: 119 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 289
+A+ + +AP + ++ + + VK A+ +E + K+NGT+ + ++ E+
Sbjct: 1273 VAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNES 1329
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 269 EDSPAE-NGDAEESNDASXNGDATEKKXTGVKRKSVALD 382
ED+ A+ E+SN A+ NG+ T GV + S +D
Sbjct: 41 EDARADLQSSMEDSNKANGNGEETTDGAEGVLQTSEEVD 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,949
Number of Sequences: 5004
Number of extensions: 34361
Number of successful extensions: 207
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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