BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P10 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 27 2.3 SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.1 SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 7.2 SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 25 7.2 SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 9.5 >SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharomyces pombe|chr 3|||Manual Length = 785 Score = 27.1 bits (57), Expect = 2.3 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = +1 Query: 139 TSMELLISCSDN*FYYAQKHCKNV 210 TS++L I+ + FYY +HC+++ Sbjct: 686 TSLKLFINILERYFYYYDQHCESI 709 >SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 26.6 bits (56), Expect = 3.1 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +2 Query: 395 INIASCQCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGLXVTREVXQDLXNLN 559 I + C A+G + NI T LKD + C RYG+ Q L N Sbjct: 138 IVVGESNCSAYGMKENIY----TCLKDLYCSVSCCDCRYGICSPERFIQVLRRDN 188 >SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 642 Score = 25.4 bits (53), Expect = 7.2 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 361 CHCILRLLNPKVDII-LLTLNYLSISSQLISLRYRTLFKNRYSIDK 227 CH +L ++ + I L +L ++ IS I L RT F+N +DK Sbjct: 331 CHSLLYIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDK 376 >SPAC6G10.03c |||abhydrolase family protein, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 428 Score = 25.4 bits (53), Expect = 7.2 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +3 Query: 312 NKIMSTFGFKRRKIQ*HQXNEFSIYCER*ILHLANVLR 425 N TFG R+ + E++ CER +LH + +R Sbjct: 15 NSYTQTFGMSWRQWRQACSEEYAKQCEREVLHTVDFIR 52 >SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 735 Score = 25.0 bits (52), Expect = 9.5 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = -1 Query: 301 YLSISSQLISLRYRTL-FKNRYSIDK*LKCFQHFCNAS 191 Y+S++S L S++ L + SI+ +KCFQ NAS Sbjct: 316 YMSVTSSLPSIQSLVLRLIHLGSIEHAIKCFQSSYNAS 353 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,344,064 Number of Sequences: 5004 Number of extensions: 41748 Number of successful extensions: 96 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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