Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   2.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   3.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   7.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.5  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 139 TSMELLISCSDN*FYYAQKHCKNV 210
           TS++L I+  +  FYY  +HC+++
Sbjct: 686 TSLKLFINILERYFYYYDQHCESI 709


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +2

Query: 395 INIASCQCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGLXVTREVXQDLXNLN 559
           I +    C A+G + NI     T LKD    + C   RYG+       Q L   N
Sbjct: 138 IVVGESNCSAYGMKENIY----TCLKDLYCSVSCCDCRYGICSPERFIQVLRRDN 188


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 361 CHCILRLLNPKVDII-LLTLNYLSISSQLISLRYRTLFKNRYSIDK 227
           CH +L ++   + I  L +L ++ IS   I L  RT F+N   +DK
Sbjct: 331 CHSLLYIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDK 376


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 312 NKIMSTFGFKRRKIQ*HQXNEFSIYCER*ILHLANVLR 425
           N    TFG   R+ +     E++  CER +LH  + +R
Sbjct: 15  NSYTQTFGMSWRQWRQACSEEYAKQCEREVLHTVDFIR 52


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 301 YLSISSQLISLRYRTL-FKNRYSIDK*LKCFQHFCNAS 191
           Y+S++S L S++   L   +  SI+  +KCFQ   NAS
Sbjct: 316 YMSVTSSLPSIQSLVLRLIHLGSIEHAIKCFQSSYNAS 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,064
Number of Sequences: 5004
Number of extensions: 41748
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)