Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P10
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    52   5e-07
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
 Frame = +2

Query: 407 SCQCPAHGYRGN----IQVSNATPLKDYAFEIKCSTVRYGLXVTREVXQDLXNLNAKNVC 574
           SC CP H    N     ++       DYAFE+ CST+R+G  VT E+  D+ NL AK   
Sbjct: 16  SC-CPHHAPATNPFKLAKLHGNNKSTDYAFEMVCSTLRFGKGVTLEIGYDVRNLGAKKTL 74

Query: 575 VMTDPNVASLSPMK 616
           ++TD NV +    K
Sbjct: 75  LITDKNVQNTIAFK 88


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 121 EHHTNSISKIKIMLQVCTYPRINNKYYKTLLFIRR 17
           E  + S+++    LQ C YP    KY+KT+ F  +
Sbjct: 42  EPKSKSVAEFTKFLQECEYPDDIIKYFKTIKFFEK 76


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = -1

Query: 289 SSQLISLRYRTLFKNRYSIDK*LKCFQHFCNASVHNKINYQNMISVIPWMFFLN*FEHHT 110
           ++Q++ L Y  + +   SI K LK +  FC+ S+ NKI+ Q     +  M  +  F   +
Sbjct: 386 NAQIMHLDYSQIMEAE-SICKNLKWYNCFCSMSLVNKIDPQFASDPVCIMMSIGSFGSTS 444

Query: 109 NSISKIKIMLQVCTYP 62
           N   K      V TYP
Sbjct: 445 NEDKKCN-SSTVPTYP 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,412
Number of Sequences: 27780
Number of extensions: 235893
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)