Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    79   7e-16
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.8  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   7.2  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   9.5  

>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
 Frame = +3

Query: 324 NMWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQHSVDHRGVPEKPGXVXTLIP----S 491
           ++WVFGYGSLIW     Y+  +  +I  Y RRF+  S DHRG    PG V TLIP     
Sbjct: 9   SLWVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWK 68

Query: 492 KFP-------NSTVWGVAYRITAQXIHEVTKHLHFTXKNGYSKKTVTFHPNNSEYLP 641
           +F        +   WG+A+RI A+   +V ++L     NGY+  +V  + +  + +P
Sbjct: 69  QFSDWSFTPFDEGCWGMAFRIPAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIP 125


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -3

Query: 130 IALLFFYKNKYSIFVLILQIFE 65
           +++L +YKN YS F+ +LQ+++
Sbjct: 33  LSILPYYKNSYSDFISVLQMYK 54


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 401 NIAY*LSLILEVRFPN*GTIPKNPHIIN 318
           NI Y +++IL   F     IP++PH+++
Sbjct: 200 NIRYTIAVILHFSFVTVDAIPESPHLVS 227


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 112 YKNKYSIFVLILQIFEWIYN 53
           Y N  SI++L++  FEW+++
Sbjct: 12  YANISSIWLLVVSFFEWLFS 31


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 557 YFMYXLCCNPVCYTPHSAIRKLAGY*SXYXTRFF 456
           +F+Y L    + YT    IRKL    S + T FF
Sbjct: 152 FFLYGLSGTSILYTAGDHIRKLDFKDSGFITPFF 185


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 561 KHLHFTXKNGYSKKTVTFHPNNSE 632
           + + +   NGY +K +TF PN+ E
Sbjct: 249 RQVTYLHNNGYLRKCLTFVPNSPE 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,397
Number of Sequences: 5004
Number of extensions: 51204
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)