Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P08
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769...    71   1e-12
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307...    50   1e-06
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976...    27   9.8  

>02_03_0153 -
           15776359-15776516,15776742-15776821,15776912-15776983,
           15777070-15777110,15777201-15777257,15777344-15777400,
           15778441-15778517,15778652-15778760
          Length = 216

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 327 MWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQHSVDHRGVPEKPGXVXTLIPSKFPNS 506
           +WVFGYGSLIW   F ++ K++ ++  YKR F    +DHRG PE P    TL   +   +
Sbjct: 3   LWVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDE--EA 60

Query: 507 TVWGVAYRITA--QXIHEVTKHLHFTXKNGYSKKTVTFHPNNSEYLP 641
             WG+AY +    +   E  K+L         K +V F+       P
Sbjct: 61  ICWGIAYCVKGGLKKEQEAMKYLERRECEYDQKISVDFYKEGDSLKP 107


>04_04_0043 -
           22330282-22330410,22330484-22330568,22330602-22330724,
           22330839-22330879,22331081-22331137,22331530-22331583,
           22331646-22331650,22332392-22332500
          Length = 200

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 327 MWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQ 428
           MWVFGYGSL+W   F ++ +LV ++  Y+R FYQ
Sbjct: 3   MWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQ 36


>04_03_0471 -
           16292916-16293209,16294558-16294803,16297557-16297692,
           16297765-16297983,16298194-16298572,16298967-16299225,
           16300044-16300114,16300604-16300625
          Length = 541

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 244 KILSIFV*SITTINHYLIKLHKVYXLXMLVLPSCLDFTIALLFFYKNKYSIFVLILQIFE 65
           K+ S+      TIN    +LHK       V+   +   ++L+FFY N+  ++ L   + E
Sbjct: 473 KLTSLIEHEYRTINQARFELHKSLPAAQRVVILAV---VSLMFFYDNRKDVYTLCSDLRE 529

Query: 64  WI 59
            I
Sbjct: 530 TI 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,850
Number of Sequences: 37544
Number of extensions: 263848
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)