Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24978| Best HMM Match : ChaC (HMM E-Value=0)                        95   4e-20
SB_27799| Best HMM Match : ChaC (HMM E-Value=0)                        75   5e-14
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               30   1.4  

>SB_24978| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 189

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 44/102 (43%), Positives = 62/102 (60%)
 Frame = +3

Query: 324 NMWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQHSVDHRGVPEKPGXVXTLIPSKFPN 503
           ++W+FGYGSL+WK +F Y+ K+  YI  Y R+FYQ S DHRGVP K              
Sbjct: 13  DLWIFGYGSLVWKVNFPYKKKVAGYIKGYVRKFYQGSCDHRGVPGK-------------- 58

Query: 504 STVWGVAYRITAQXIHEVTKHLHFTXKNGYSKKTVTFHPNNS 629
           STVWG++Y++ AQ    V ++L    K+GY+    TFHP+ +
Sbjct: 59  STVWGISYQVDAQDEPSVLRYLDIREKDGYTAGFTTFHPSGN 100


>SB_27799| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 216

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = +3

Query: 321 NNMWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQHSVDHRGVPEKPGXVXTLIPSKFP 500
           +++WVFGYGSLIWK DF YE  +V +I  ++R+F+Q SV HRG  E              
Sbjct: 21  DSIWVFGYGSLIWKPDFTYERSVVGHIRGFERKFWQGSVWHRGNEE-------------- 66

Query: 501 NSTVWGVAYRITAQXIHEVTKHLH--FTXKNGYSKKTVTFHPNNSEYLPF 644
              VWGVAY+++ + I      L+       GY    +TF+P +    PF
Sbjct: 67  TGQVWGVAYKVSGEDIDTALGRLNKREIALGGYELHNLTFYPQDQSLEPF 116


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 571 CKCLVTS--CIXCAVILYATPHTVLLGNLLGIKVXT 470
           C CLVTS  CI  + +  + PHT LL  LL  ++ T
Sbjct: 106 CPCLVTSSSCIPSSRVASSFPHTTLLSGLLPPRLPT 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,173
Number of Sequences: 59808
Number of extensions: 346553
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)