Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P08
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical ...    66   2e-11
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical
           protein F22F7.7 protein.
          Length = 232

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
 Frame = +3

Query: 324 NMWVFGYGSLIWKADFKYETKLVXYILXYKRRFYQHSVDHRGVPEKPGXVXTLIPSKFPN 503
           ++W+FGYGSLIW   F + T    Y + + RR YQ +  HRG  + PG V TLI     N
Sbjct: 49  SLWIFGYGSLIWNPGFTFSTSRKAYAIGWARRMYQGNTYHRGDEKLPGRVATLIEE--TN 106

Query: 504 STVWGVAYRITAQ-XIHEVTKHL-HFTXKNGYSKKTV 608
           S   GV +R+  +  I    K+L      NGY+ + V
Sbjct: 107 SYTNGVVFRVDGKSAIATAVKYLEQRECDNGYAFRMV 143


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 150 HPVWTLQLHFCFFTKISTLYLF*FCKFL 67
           H  W++ + +  F+    LYLF FCKFL
Sbjct: 72  HSNWSINILYSVFSLTIVLYLF-FCKFL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,213,774
Number of Sequences: 27780
Number of extensions: 283142
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)