Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P07
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 490 GGHSRCRRYFTSVNHNQELH 431
           G  + C RY+  VN  QEL+
Sbjct: 37  GDETYCDRYWECVNGQQELY 56


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 466 SVCIASDRRHTLLPVRAARQKXQEQSPDHGQTRCQHPFSV 585
           ++C  + R HTL      +   Q + P  G T    PF +
Sbjct: 302 AICFKAPRYHTLDITEPVKVFIQLRRPSDGATSEALPFEL 341


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 468 RLHRE*PPSYL--ASRTRGKTKXTRAEPRSRPNSL 566
           +LH +  P +   A+ TRGK +  + +P    NS+
Sbjct: 537 QLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSM 571


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 468 RLHRE*PPSYL--ASRTRGKTKXTRAEPRSRPNSL 566
           +LH +  P +   A+ TRGK +  + +P    NS+
Sbjct: 429 QLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSM 463


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,036
Number of Sequences: 336
Number of extensions: 2760
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)