Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P07
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)         188   3e-48
SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)          64   9e-11
SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)                     29   4.4  
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)            28   5.8  
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score =  188 bits (459), Expect = 3e-48
 Identities = 90/100 (90%), Positives = 95/100 (95%)
 Frame = +2

Query: 353 VEIXXSVRGEDVYIVQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKX 532
           VEI  SVRGEDVYI+QSG GEINDN+MELLIMINACKIASA RVTAVIPCFPYARQDKK 
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIASAQRVTAVIPCFPYARQDKKD 61

Query: 533 KSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIP 652
           KSRAPI+AKLVAN+LSV+GADHIITMDLHASQIQGFFDIP
Sbjct: 62  KSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIP 101


>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
          Length = 270

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 31/54 (57%), Positives = 39/54 (72%)
 Frame = +2

Query: 491 VIPCFPYARQDKKXKSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIP 652
           VIP  PY++Q K  K R  I AKL+A++L  SG   IITMDLH+ +IQGF+DIP
Sbjct: 2   VIPYLPYSKQSKMHK-RGAIPAKLMASLLGKSGLTSIITMDLHSKEIQGFYDIP 54


>SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +2

Query: 431 MELLIMINACKIASASRVTAVIPCFPYARQDKK-XKSRAPITAKLVANILSVS 586
           MELL+M++  + ASA R+  VIP + YARQ +     R P+   L AN+++++
Sbjct: 1   MELLLMVSTMRRASAKRINVVIPYYGYARQIQGFFGPRVPVD-NLEANLVAMN 52


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 239  IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCV 355
            + +  GS HP+LA  + +R+G + G+ V +K     TC+
Sbjct: 1190 VDILMGSDHPELALALEERVG-EPGEPVARKTPQGWTCI 1227


>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 395 VQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK 529
           VQ G     D L  L++ I    + S    TAVI C+ Y   +K+
Sbjct: 416 VQRGGQAKTDKLERLIVRIGIFSVLSTVPATAVIACYFYEYANKE 460


>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
          Length = 565

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 508 VRAARQKXQEQSPDHGQTRCQHPFSVWSRSHHHYGSS 618
           VR A  K +E SP     RC+ P S W + H   G +
Sbjct: 384 VRGAEGKEEENSPS--ARRCEDPPSHWGKEHASSGGN 418


>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 RGKTKXTRAEPRSRPNSLPTSFQ 581
           RG+T+  R+ P SRP  LP  +Q
Sbjct: 179 RGRTRGNRSTPYSRPRELPDRWQ 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,714,837
Number of Sequences: 59808
Number of extensions: 353543
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)