Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P04
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz...    34   0.006
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   4.8  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   4.8  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   6.3  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   8.3  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    24   8.3  

>SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 32

 Score = 34.3 bits (75), Expect = 0.006
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 101 ITDIQLAVFSNILGVSIFLLVILYHYIN 184
           +TD+QL       G+S+ LL+ILYHY++
Sbjct: 1   MTDVQLQNIVTTFGISMMLLIILYHYLS 28


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 53  IILII*FSLKHPTLKMITDIQLAVFSNILGVSIFLLV---ILYHYINANS 193
           +I+++ FSL    +   T I LA+F  +  +S FLL+     Y +IN  S
Sbjct: 67  LIIVLYFSLV--IVNKTTSIALALFKTLAVISFFLLIGCLFAYWFINNGS 114


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 22  IQKNLNTKLIHNFNNLIQFKTSNSKNDHRHPARSFLQHFGSLHI 153
           I++   +KL+H +N L+       K+  R      +Q   +LHI
Sbjct: 221 IRRLTESKLLHMYNKLLILSEIKEKSHWRERIWDLIQGMVTLHI 264


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 239 TPMLLQWPRLTYIIWNY 189
           T  LL W   TY +WNY
Sbjct: 52  TTELLDWNPETYSVWNY 68


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 263 IKHIFLLETPMLLQWPRLTYIIWNYSHLCSD 171
           I H ++ E   L+ +P  T  + +Y+H C +
Sbjct: 249 ISHDYITEHSSLVVYPTDTDFVGHYNHYCKN 279


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 VILYHYINANSSK*YRSIAAIVKALVSLI 247
           V+LY Y+     +   SI   +KA+VS++
Sbjct: 860 VVLYEYLGEEYPEVLGSILGAIKAIVSVV 888


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 67  LIQFKTSNSKNDHRHPARS 123
           ++  KTSNSK + R+P ++
Sbjct: 181 MLSVKTSNSKGETRYPVKA 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,426
Number of Sequences: 5004
Number of extensions: 21069
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)