BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_P04 (363 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz... 34 0.006 SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 1.6 SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 4.8 SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 4.8 SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 24 6.3 SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 24 8.3 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 24 8.3 >SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 32 Score = 34.3 bits (75), Expect = 0.006 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 101 ITDIQLAVFSNILGVSIFLLVILYHYIN 184 +TD+QL G+S+ LL+ILYHY++ Sbjct: 1 MTDVQLQNIVTTFGISMMLLIILYHYLS 28 >SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 115 Score = 26.2 bits (55), Expect = 1.6 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +2 Query: 53 IILII*FSLKHPTLKMITDIQLAVFSNILGVSIFLLV---ILYHYINANS 193 +I+++ FSL + T I LA+F + +S FLL+ Y +IN S Sbjct: 67 LIIVLYFSLV--IVNKTTSIALALFKTLAVISFFLLIGCLFAYWFINNGS 114 >SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1389 Score = 24.6 bits (51), Expect = 4.8 Identities = 12/44 (27%), Positives = 21/44 (47%) Frame = +1 Query: 22 IQKNLNTKLIHNFNNLIQFKTSNSKNDHRHPARSFLQHFGSLHI 153 I++ +KL+H +N L+ K+ R +Q +LHI Sbjct: 221 IRRLTESKLLHMYNKLLILSEIKEKSHWRERIWDLIQGMVTLHI 264 >SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 344 Score = 24.6 bits (51), Expect = 4.8 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -2 Query: 239 TPMLLQWPRLTYIIWNY 189 T LL W TY +WNY Sbjct: 52 TTELLDWNPETYSVWNY 68 >SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 24.2 bits (50), Expect = 6.3 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -2 Query: 263 IKHIFLLETPMLLQWPRLTYIIWNYSHLCSD 171 I H ++ E L+ +P T + +Y+H C + Sbjct: 249 ISHDYITEHSSLVVYPTDTDFVGHYNHYCKN 279 >SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Schizosaccharomyces pombe|chr 1|||Manual Length = 1188 Score = 23.8 bits (49), Expect = 8.3 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 161 VILYHYINANSSK*YRSIAAIVKALVSLI 247 V+LY Y+ + SI +KA+VS++ Sbjct: 860 VVLYEYLGEEYPEVLGSILGAIKAIVSVV 888 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 23.8 bits (49), Expect = 8.3 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = +1 Query: 67 LIQFKTSNSKNDHRHPARS 123 ++ KTSNSK + R+P ++ Sbjct: 181 MLSVKTSNSKGETRYPVKA 199 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,194,426 Number of Sequences: 5004 Number of extensions: 21069 Number of successful extensions: 48 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 48 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 112046990 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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