Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P04
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   2.6  
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390...    27   4.5  
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934...    27   4.5  
11_04_0320 + 16354122-16354226,16354652-16356859                       27   6.0  
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123...    26   7.9  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 98  MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 241
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>08_01_0441 +
           3890231-3890845,3891253-3894220,3906625-3906713,
           3908317-3908337
          Length = 1230

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 40  TKLIHNFNNLIQFKTSNSKNDHRHPARSFLQHFGSLHILISYPVSLHKCE*FQMI 204
           T+ +H FN L ++   + +ND     + FL   G L+  +SYP+ +     FQ +
Sbjct: 385 TEYLHEFNRLARYAPEDVRNDEERQEK-FL---GGLNDELSYPLMVGDYPDFQKL 435


>01_06_0881 +
           32692345-32692497,32693167-32693286,32693382-32693474,
           32694197-32694283,32696052-32696063,32696553-32696625,
           32697073-32697182,32697608-32697658,32698154-32698242,
           32698518-32698599,32698680-32698793,32699015-32699094,
           32699749-32699884,32700210-32700280,32700363-32700457,
           32700467-32700597,32701009-32701398
          Length = 628

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 61  NNLIQFKTSNSKN-DHRHPARSFLQHFGSLHILISYPVS 174
           +N IQ  + +S+N D  H  +S +Q   S  ILIS+PV+
Sbjct: 520 DNSIQQNSGSSENLDESHVIKSSVQAQSSSVILISHPVA 558


>11_04_0320 + 16354122-16354226,16354652-16356859
          Length = 770

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 116 LAVFSNILGVSIFLLVILY-HYINANSSK*-YRSIAAIVKALVSLIKKCALY*DVNKSF 286
           L  FS+IL V   ++ +     I+A + K  + S   +  ALV++  KC    D NK+F
Sbjct: 393 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451


>05_03_0297 -
           11911699-11911772,11911987-11912072,11912245-11912332,
           11912592-11912719,11913540-11913961,11931803-11932423
          Length = 472

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 40  TKLIHNFNNLIQFKTSNSKNDHRHPARSFLQHFGSLHILISYPV 171
           T+ +H FN L ++   + +ND     + FL   G L+  +SYP+
Sbjct: 167 TEYLHEFNRLARYAPEDVRNDEERQEK-FL---GGLNDELSYPL 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,129,020
Number of Sequences: 37544
Number of extensions: 116785
Number of successful extensions: 229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)